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TRANSCRIPT CARD

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  1. Region 'REG00000464' > 
  2. Clone 'ma130p02' > 
  3. Clone 'cima836706' > 
  4. Transcript 'KH2012:KH.C14.312.v1...'

Transcript Model

Transcript Id

KH2012:KH.C14.312.v1.A.ND1-1

Possible name(s)

LDB3; PDLIM1; PDLIM3

Gene model

KH2012:KH.C14.312

Location

KhC14 [388,507 / 394,604]

Sequences

Amino acid sequence

Length: 285

>KH.C14.312.v1.A.ND1-1
KFLVYYHIRRENRVKMCPNYPHPTILIIFITQESQQVKMAPPRVQNSVTLFGSAPWGFRL
SGGKEFNQPLVITRITPGSVAARSGLTSGDVLVAVNGLFVTEMTQDQCEVKIKQAVGSIQ
LVVEKNAAAVSQNSSGEITMDADRSIYVQGGPTHNRTGQSGTATRPMKVPISGHNSVPVF
DPSMLKKSASTKQGTVVMKGPGKSKVIHAQYNTPMGMYSNDNIIDTVQAQAQSMGVSLPG
ASGDSSPLNPNSAVFREVHRQSAAPNKSNQSRSFKMLQSFVENEN

Nucleotide sequence

Length: 1,292

>KH2012:KH.C14.312.v1.A.ND1-1
TTCTTTTCAATCTAAATGAGCTGTTTTTTTCAAAAATACAAAAGTAACCTTCATATAGTA
GGATGGGGGAAGATGGGACACCTTCGGCGCATAATATCCGAATATCCTAATCATGTTTTA
AACAATTAACAACGGTCTATTGGAGTCTTGAGCATATAATTCTTTAAAAATTCCTTGTTT
ACTACCACATCCGACGAGAAAATAGAGTTAAAATGTGTCCTAACTACCCCCACCCTACTA
TATTAATCATTTTTATTACACAGGAATCACAGCAGGTTAAGATGGCTCCACCACGGGTTC
AGAATTCTGTTACTTTGTTTGGATCTGCACCATGGGGTTTCAGATTATCTGGAGGAAAGG
AATTCAACCAACCATTAGTTATTACACGGATTACACCTGGAAGTGTAGCAGCACGATCTG
GCTTGACTTCTGGTGATGTATTGGTCGCTGTAAACGGTCTGTTTGTTACTGAAATGACTC
AGGATCAATGTGAGGTTAAAATAAAGCAAGCAGTTGGATCAATTCAACTCGTTGTTGAAA
AAAATGCTGCAGCTGTGTCTCAAAACTCATCTGGTGAGATAACCATGGATGCTGACAGAA
GTATTTATGTACAAGGCGGGCCAACACATAATAGAACAGGACAAAGTGGAACTGCAACAA
GACCTATGAAAGTACCTATAAGCGGTCACAACTCTGTACCAGTGTTCGATCCATCGATGC
TTAAAAAATCAGCATCAACAAAACAAGGAACTGTAGTCATGAAAGGACCAGGCAAATCTA
AAGTGATCCATGCGCAATATAACACGCCTATGGGAATGTATTCGAATGATAATATCATTG
ATACTGTACAAGCACAAGCTCAATCTATGGGAGTGTCTTTGCCCGGGGCTAGCGGAGACT
CTTCCCCTCTGAACCCAAACTCTGCTGTTTTCCGCGAAGTACATCGACAGTCTGCAGCCC
CAAACAAATCAAACCAGTCAAGGAGTTTTAAGATGCTGCAGTCGTTCGTAGAAAATGAAA
ATTGATTGGAAAATATACTTAAGAACTGGAATTTTATTGCACCTTAAATACTATGTTTCG
GTTAAAGTGTATGTTTGTATTTAAAAACACAGACTGAAACCGGATAGAATATCTTCGAAA
CACAAAACTGCAAGTGTTTTTATAAGTCTATTATTTATACTCTTGTGTTCATCTCGATCC
AACTTGTAAAATTTTCCACCTGAAGAGATGTGACATAATGCATAAACTATTGCCTATATA
AAGTTATGTGTTACAATATACCTTTGTGTATA

InterProScan

SUPERFAMILY
PDZ_sf (IPR036034) - T[45-126] 4.99E-19
ProSiteProfiles
PDZ (IPR001478) - T[52-127] 14.958
Pfam
PDZ (IPR001478) - T[53-124] 3.9E-14
SMART
PDZ (IPR001478) - T[54-127] 7.6E-17
Pfam
DUF4749 (IPR031847) - T[205-284] 2.5E-17
SMART
Zasp-like_motif (IPR006643) - T[205-230] 1.5E-11

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LDB3_HUMAN 29.553 % 101 3.62E-24
PDLI3_HUMAN 33.846 % 132 2.5E-36
PDLI1_HUMAN 30.8 % 97.8 1.3E-23