- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C14.369.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.369.v1.R.ND1-1
Possible name(s)
C6; C8A; C9
Gene model
Location
KhC14 [771,360 / 782,869]
Amino acid sequence
Length: 565
>KH.C14.369.v1.R.ND1-1
FKMRLTPLLVLLVLLVGTSSAWRRRRRRRRAPSPVNCAVSNWSGWGTCSRSCATGSQSRT
RGITRHPAHGGSGCGALSQSRSCNRHKCPIHCRWGNWGPWSDCTSCFPGGRSRSRNVTVA
AMFGGNSCSGLAVSTDHSCTAADHCPFAIQCPSRMYSCSDELTCIQPRLRCNGDDDCTDF
SDEHECPAIRKPCGSTSIREIPYIDIAGLGYDITLGEEIGTILDNRQYGGRCGRVRSGEH
NQLFRKPANMQSFRFQSRVQTTVSAVSYESAKSFYESEKGEMERKLQGSASFSFGNIFSL
SGGATKTRNSKTLRIIERGTSSDVKYFRVFSNIVLSRFRTIRRSFKLSHSFRQRLLELPQ
HYDYAKYSELITDYGTHFYSSGVLGGRYEFVYRFSKAELRESGLSDEEQRNCLKTEASFK
IFKLGSSGGSNRCTNNVLSRRHNGSFTMAAKEVISNVIGGQSHTASALSFFARNRLTTNA
YENWTASVKLSPAVIDFKLRPISSVIPDRAKQRNMALAIEHYFAKYQTSKCTGRCENSGR
SVVVRDGTICKCLCAPGRSGSSCEN
Nucleotide sequence
Length: 2,000
>KH2012:KH.C14.369.v1.R.ND1-1
CAAACTGCAAGTAAGAGGCGTAATTCAAAATGAGACTTACCCCACTCCTCGTGTTGTTGG
TTCTTTTAGTTGGCACTTCTTCAGCTTGGAGAAGAAGACGTCGTCGTCGAAGAGCTCCGT
CGCCAGTAAATTGTGCGGTGTCAAATTGGTCGGGTTGGGGAACATGCAGCAGAAGTTGTG
CAACTGGAAGTCAATCTCGCACTCGAGGAATAACTCGCCACCCAGCCCACGGTGGTAGCG
GTTGTGGTGCATTAAGTCAGTCAAGGTCGTGCAATCGACATAAATGTCCAATACATTGTC
GGTGGGGTAATTGGGGACCGTGGTCGGATTGCACATCATGTTTCCCAGGCGGAAGGAGTC
GATCCCGTAACGTCACAGTAGCCGCCATGTTTGGAGGAAATTCGTGTTCTGGACTTGCTG
TTTCAACAGATCACTCATGTACTGCCGCTGATCATTGTCCATTTGCTATACAATGCCCAA
GTCGCATGTATTCGTGTTCAGATGAGTTAACTTGCATTCAGCCAAGATTACGTTGCAATG
GCGACGATGATTGCACCGATTTCTCTGATGAGCATGAATGTCCTGCCATACGAAAACCAT
GCGGAAGTACAAGTATAAGAGAAATACCATACATTGATATTGCTGGGTTGGGATACGACA
TTACACTAGGAGAGGAGATCGGAACAATTCTAGATAATCGTCAATACGGTGGAAGATGTG
GAAGAGTAAGAAGTGGCGAACATAATCAACTGTTTCGAAAACCAGCAAATATGCAATCAT
TCCGATTCCAGAGTCGCGTCCAAACTACCGTGTCTGCAGTTTCATACGAAAGCGCGAAAA
GTTTTTACGAATCTGAAAAAGGAGAAATGGAACGAAAACTTCAGGGCTCGGCATCGTTTT
CTTTTGGAAATATATTCAGCTTAAGTGGAGGTGCAACCAAAACAAGAAATTCAAAAACTT
TACGAATCATCGAACGCGGAACATCTAGTGACGTCAAATACTTCAGAGTTTTCAGCAACA
TTGTTTTATCCAGATTCAGAACCATTCGAAGATCGTTTAAATTGTCCCACTCATTTCGAC
AACGGTTACTAGAACTTCCCCAACATTACGATTATGCCAAATATTCGGAGCTCATAACAG
ATTACGGAACGCATTTCTACTCTTCTGGTGTGCTGGGCGGCCGGTATGAATTCGTGTACA
GGTTTTCGAAGGCCGAACTCAGAGAATCAGGTTTATCTGACGAAGAACAGAGGAACTGCT
TAAAAACTGAGGCTTCTTTTAAGATATTTAAGCTTGGCAGCAGCGGTGGAAGTAATAGGT
GTACGAATAATGTATTGTCACGACGACATAACGGAAGTTTTACAATGGCTGCTAAGGAAG
TTATATCAAATGTGATTGGTGGGCAGTCTCATACAGCTAGTGCTCTCAGTTTCTTTGCTA
GAAACCGACTTACAACAAATGCTTACGAAAACTGGACAGCATCAGTTAAACTTAGCCCTG
CAGTCATCGATTTCAAGCTGCGACCCATATCATCGGTCATCCCAGACAGAGCGAAGCAGA
GAAACATGGCTTTGGCAATTGAACACTACTTCGCTAAATACCAGACTTCGAAATGTACTG
GCCGTTGTGAAAATAGTGGTAGATCGGTCGTAGTGAGAGATGGGACAATCTGCAAATGCC
TTTGTGCCCCTGGTCGTTCAGGATCATCATGTGAAAATTGATCAGCTCAACTTAAAAACT
GTAAATAGATCACCATGGGCGTTTTACCACATAAAAACGCTAAATCTTCACTCTTGTATA
TACAACATCTGGATCCATAATAATCTTGCAAACCAAGAGACAGTATACACTTAACAGAAG
CTTTATTTCCAACAGCAAATTGACAACACCGCAACCAACCACGTTAAGCACCTTCGGTGA
AGGAATGAACTGAATTTTCCAAGCAGTAATAGTACGGTTTAACTGAATATAAACACAATA
ATACATGTACGCCATTCAAA
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[33-88] 3.14E-9 - T[90-135] 3.27E-6 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[35-89] 1.6E-11 - T[90-139] 6.6E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[36-89] 12.172 - T[91-146] 10.655 |
| SMART |
TSP1_rpt (IPR000884) - T[39-89] 6.6E-10 - T[94-146] 3.1E-4 |
| Pfam |
TSP1_rpt (IPR000884) - T[40-88] 6.1E-5 - T[95-144] 1.2E-4 |
| PRINTS |
MAC_perforin (IPR001862) - T[112-128] 1.8E-23 - T[157-177] 1.8E-23 - T[356-378] 1.8E-23 - T[483-502] 1.8E-23 - T[532-552] 1.8E-23 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[150-195] 3.01E-8 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[150-187] 11.663 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[150-188] 3.3E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[150-186] 3.3E-7 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[151-186] 4.74222E-8 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[164-186] . |
| ProSiteProfiles |
MACPF (IPR020864) - T[189-534] 28.435 |
| Pfam |
MACPF (IPR020864) - T[321-522] 2.7E-37 |
| SMART |
MACPF (IPR020864) - T[325-524] 5.7E-30 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[367-378] . |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[552-563] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 32.959 % | 283 | 4.36E-85 |
| CO8A_HUMAN | 28.46 % | 219 | 4.64E-64 |
| CO9_HUMAN | 27.866 % | 193 | 1.11E-54 |