- Transcript 'KH2012:KH.C14.386.v1...'
Transcript Model
Transcript Id
KH2012:KH.C14.386.v1.A.ND1-1
Possible name(s)
C6; C8A; C9
Gene model
Location
KhC14 [764,210 / 769,901]
Amino acid sequence
Length: 567
>KH.C14.386.v1.A.ND1-1
KMRLSILFWVIVLFVATTSAWRRRRRRNPPPAPVHCAVSGWTGWSACSVSCGGGSQSRTR
GITRNPAHGGSGCGALSQSRSCNRHKCPIHCQWGNWGPWSDCTSCSYGGRSRMRNVTVAA
MFGGNRCAGLSKTTDYACVSSDTCPYEVECSSDTFACGDGLTCIRTNLQCNGDDDCTDYS
DELECSERHRRPCGSTTMSEIPYVDIAGLGYDITLGEEIGTILDNRQYAGRCDRVRSGEH
EETFRKPANMQSFRFQSQATSSFTAISYQSSKGFYESERSNMERKLQASASFSFSDMFGL
SGSATKTRNSKTLRIIDRGTSSDVKYFRVFGEITLSRFRTIRRSFKLSHSFRQRLLELPQ
HYDYAKYSELIADYGTHFYSSGVLGGRYEYIYRFSKSDLALSGLTDEEQKNCLTTETSMK
FLKGFFGGSGGTNKCSTNVLSRRYNGSFALAAKEAISNVIGGQSHTTSALTFYSSNGPNT
AAYERWSRSVRVSPAIIDFMLTPMSSVIPDRNKQANMERALYDYYAKYNANKCTGRCENG
GRAVVVKDGSECKCLCTPGHSGPSCQS
Nucleotide sequence
Length: 1,869
>KH2012:KH.C14.386.v1.A.ND1-1
AAAATGAGGCTTAGCATACTCTTCTGGGTGATTGTGTTATTTGTGGCAACAACTTCAGCT
TGGAGAAGACGCCGCAGGAGAAACCCGCCACCAGCTCCAGTGCATTGCGCGGTATCCGGG
TGGACAGGCTGGAGTGCTTGCAGTGTAAGTTGTGGCGGTGGAAGTCAATCTCGTACTCGA
GGAATCACCCGCAACCCAGCCCACGGTGGTAGCGGTTGTGGTGCATTAAGTCAATCAAGG
TCGTGTAATCGACATAAATGTCCAATACATTGTCAGTGGGGTAATTGGGGACCGTGGTCG
GATTGCACGTCGTGTTCTTATGGAGGAAGGAGTCGAATGCGTAATGTCACAGTCGCAGCA
ATGTTCGGTGGAAATAGATGCGCTGGCTTGTCCAAAACTACTGATTACGCGTGTGTCAGT
AGTGATACATGTCCATACGAAGTCGAATGCTCAAGTGACACATTCGCATGTGGTGACGGT
CTGACTTGCATTCGTACAAATCTCCAATGCAATGGTGATGATGACTGCACTGACTACTCC
GATGAGCTTGAGTGTAGCGAGAGACATAGACGGCCATGCGGAAGTACAACTATGAGCGAA
ATACCATACGTTGATATTGCCGGGTTAGGATATGACATTACACTAGGAGAGGAGATCGGA
ACGATTCTAGATAATCGTCAATACGCGGGAAGATGCGACAGAGTTAGAAGCGGTGAACAC
GAAGAAACATTCCGTAAACCGGCAAACATGCAGTCGTTCAGATTTCAGTCTCAAGCGACC
TCCTCCTTTACTGCCATTTCTTACCAAAGCTCAAAAGGTTTTTACGAATCTGAAAGAAGC
AACATGGAGAGAAAACTGCAAGCGTCTGCGTCGTTTTCATTTAGCGACATGTTCGGCTTG
AGCGGCAGTGCAACCAAAACAAGAAATTCAAAAACTTTGCGAATTATTGACCGAGGAACA
TCAAGTGATGTTAAATACTTCAGAGTTTTTGGTGAAATCACTTTATCCAGATTCAGGACC
ATTCGAAGATCGTTCAAATTGTCCCACTCATTCCGACAACGGTTACTAGAACTTCCTCAA
CATTACGATTATGCCAAATATTCGGAGCTCATAGCAGATTACGGAACGCATTTCTACTCT
TCTGGTGTGCTGGGCGGACGGTATGAATACATCTACAGGTTTTCTAAATCGGACCTTGCT
CTATCAGGTTTAACCGATGAAGAACAGAAGAACTGCTTGACCACTGAAACGTCAATGAAA
TTTTTGAAAGGTTTCTTTGGTGGAAGCGGGGGGACAAACAAGTGTTCAACTAATGTATTG
TCTCGTCGGTATAACGGAAGTTTCGCCTTGGCTGCAAAGGAGGCAATATCAAATGTGATT
GGCGGACAGTCTCATACAACTAGTGCTCTTACTTTCTACTCCAGCAACGGACCGAATACG
GCTGCTTACGAAAGGTGGTCGAGATCCGTCAGAGTTAGCCCTGCAATCATCGATTTTATG
TTAACTCCGATGTCATCGGTGATACCCGATAGAAACAAGCAAGCTAACATGGAAAGAGCG
TTGTACGATTACTATGCCAAATACAATGCAAATAAATGCACTGGCCGATGTGAAAACGGT
GGGAGAGCCGTAGTCGTAAAGGATGGTAGTGAATGCAAATGTTTGTGCACGCCTGGTCAT
TCTGGCCCGTCGTGTCAAAGTTGAGAAGATGTTTAATCCAGACTGCTCTAAGTTCAATCA
GTTTCAACACGGTTTATATACTGGACTTCATTTTTATTGTCGTATTAATGTCTGCTATGT
GTAATTCAACTTGTATGTTGTGCTGTGCGTGTTTACATCTGTATAAAATAAAAAAAAATT
TTCTCAAAA
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[32-87] 1.05E-10 - T[89-132] 4.71E-7 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[34-88] 4.3E-13 - T[89-138] 1.3E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[35-88] 12.876 - T[90-145] 9.745 |
| SMART |
TSP1_rpt (IPR000884) - T[38-88] 2.2E-12 - T[93-145] 0.0041 |
| Pfam |
TSP1_rpt (IPR000884) - T[39-87] 3.5E-8 - T[94-144] 2.9E-5 |
| PRINTS |
MAC_perforin (IPR001862) - T[111-127] 2.1E-21 - T[156-176] 2.1E-21 - T[356-378] 2.1E-21 - T[485-504] 2.1E-21 - T[534-554] 2.1E-21 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[149-185] 5.8E-10 |
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[149-187] 2.0E-9 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[149-186] 12.088 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[149-189] 1.96E-8 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[150-185] 2.17807E-9 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[163-185] . |
| ProSiteProfiles |
MACPF (IPR020864) - T[189-536] 28.742 |
| Pfam |
MACPF (IPR020864) - T[320-524] 1.6E-33 |
| SMART |
MACPF (IPR020864) - T[325-526] 3.3E-34 |
| ProSitePatterns |
MACPF_CS (IPR020863) - T[367-378] . |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[529-566] 12.736 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[554-565] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CO6_HUMAN | 33.21 % | 284 | 2.32E-85 |
| CO8A_HUMAN | 28.627 % | 213 | 1.56E-61 |
| CO9_HUMAN | 27.613 % | 192 | 4.92E-54 |