- Transcript 'KH2012:KH.C5.85.v1.B...' >
- Transcript 'KH2012:KH.C1.442.v1....' >
- Transcript 'KH2012:KH.C1.442.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.442.v1.A.SL2-1
Possible name(s)
ALYREF; POLDIP3
Gene model
Location
KhC1 [9,431,947 / 9,437,308]
Amino acid sequence
Length: 431
>KH.C1.442.v1.A.SL2-1
CVKMYTTWQKQARVPDARLRLQSKYNDARSKLTKRRPKDEPVFDARQAIKAKKAPSPITI
EHKPIKVKPEKPVEKKSLKLTTRTIRNPGAIVPLENQTVGKNLLLRSKQIGFISVTNGSR
VLMEKVTMDDAGLKVAIRNDIMKEKPTRRKNNNNKQGDSSVKVNKGIKITMTNPDAEKKP
SPKPSKTNVQRKQPPKPKKRSLPPPPPSPTPSPEPEVIHHHHHIPHESPPAPKRKYMAPS
APMYSDLILEQKRPKHQYNHPRPMNSGENSVFFQERVRHHDPHPPIAETGYSHEYISPFE
GTKILVSNLHPIVVEDDILELFSVLGPVRRARMVGPGKAEIVFIRRDDAILAYQKYNNRD
LDGQPMQMKLLLQESNPQCNKQYSWMSDITPRRSTAGADITEIDPNILQRALFKGGSTGT
STRPVTFTVKI
Nucleotide sequence
Length: 1,771
>KH2012:KH.C1.442.v1.A.SL2-1
TTCTGTTCAAAAAAAATAGTATTCTTGTTACTGCCTATAATATTGACACCAGACGTTTTG
CATATACTGAAAACTGGAGCGTAAATAAATGTTGATGTGTTAAAATGTATACAACCTGGC
AAAAGCAAGCAAGAGTGCCTGATGCACGCTTGAGGTTACAATCCAAGTACAATGATGCCA
GATCAAAGTTGACTAAGCGGAGGCCAAAAGACGAGCCAGTTTTTGATGCCAGGCAAGCCA
TTAAAGCGAAAAAAGCTCCAAGCCCAATAACAATTGAACACAAACCAATAAAAGTCAAAC
CAGAAAAGCCAGTAGAAAAGAAATCGTTGAAACTAACGACTCGAACAATTCGTAATCCTG
GTGCAATTGTTCCATTAGAAAATCAAACTGTTGGCAAGAATTTGTTGCTACGATCAAAAC
AAATCGGTTTCATTTCAGTCACCAATGGATCTAGAGTCCTAATGGAGAAAGTTACAATGG
ATGACGCTGGGTTAAAAGTGGCGATACGTAACGATATAATGAAAGAAAAACCTACCAGAC
GAAAGAATAACAACAACAAACAAGGTGATAGCTCTGTCAAGGTGAATAAAGGAATTAAAA
TCACAATGACAAACCCAGATGCTGAAAAGAAGCCCTCTCCGAAACCAAGTAAAACTAATG
TTCAGAGAAAACAGCCACCTAAACCAAAAAAGCGGTCACTGCCGCCCCCACCCCCCTCAC
CTACTCCGTCCCCTGAGCCTGAGGTGATACACCACCACCACCATATCCCGCACGAAAGCC
CTCCTGCTCCAAAGCGAAAATACATGGCACCATCCGCACCAATGTACTCTGACCTAATAC
TTGAACAAAAACGCCCGAAACATCAGTATAATCATCCAAGGCCGATGAATTCCGGTGAAA
ATAGCGTTTTCTTTCAAGAAAGAGTAAGGCATCATGATCCACACCCACCAATAGCAGAGA
CAGGTTATTCGCATGAATACATCAGTCCATTTGAAGGAACAAAGATACTTGTCTCCAATC
TTCACCCAATTGTAGTGGAAGATGATATTTTGGAATTATTCAGTGTCCTTGGCCCAGTAC
GGCGCGCACGAATGGTTGGACCTGGAAAAGCTGAAATTGTGTTTATCCGAAGAGATGACG
CAATCCTCGCTTATCAGAAATATAATAATCGTGATTTAGACGGTCAGCCAATGCAAATGA
AGCTTTTATTGCAAGAAAGTAACCCACAGTGTAATAAACAATACAGTTGGATGTCAGATA
TTACCCCACGCCGTTCTACTGCTGGTGCTGATATAACTGAAATTGATCCAAATATTCTAC
AGAGGGCACTGTTTAAAGGAGGGAGTACTGGAACATCAACAAGGCCGGTTACATTCACTG
TAAAAATATAAAAATGAATCAAACGGCATGATTTTTTTACTTTGTTGCAAAGCAAACAGT
TACCGATAAAACGTACACGAATGTAAAGACATTGCCTAGTGTTGGACTCAAAATTTACAC
AAGAGTAATAATTGTATCATGTTTTGATCAATTTTCAAGGTTGTTTTCACTTTAAACAAT
TGAAAGTGTTTCAATATTTTATTCATCACCATAGAAAGAAGGTTTGGGGGAGTTGGGTTG
GTGTATTTTAAATAGATCGAATCATTCATGTTTTAGTATTTTCTGAATGTTGCGAATACA
AACTGTATAAAGCTTTTTCTGTCGTTATGAAAATATTGTTTCTTAATAAACATCACAAAC
AATGAAAACAATAAATGCATTTACAAAAATA
| PANTHER |
PDIP3 (IPR034785) - T[24-429] 4.5E-81 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[293-372] 6.04E-14 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[295-384] 4.6E-10 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[302-373] 11.23 |
| CDD |
PDIP3_RRM (IPR034784) - T[302-370] 5.72063E-38 |
| SMART |
RRM_dom (IPR000504) - T[303-369] 9.7E-10 |
| Pfam |
RRM_dom (IPR000504) - T[304-366] 9.5E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PDIP3_HUMAN | 44.079 % | 129 | 4.22E-33 |