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TRANSCRIPT CARD

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  1. Transcript 'Phfumi.CG.MTP2014.S5...'
  2. Transcript 'KH2012:KH.C2.141.v1....'
  3. Transcript 'Phfumi.CG.MTP2014.S5...'
  4. EST 'FF727338.1'
  5. Transcript 'KH2012:KH.C14.567.v1...'

Transcript Model

Transcript Id

KH2012:KH.C14.567.v1.C.nonSL6-1

Possible name(s)

ADGRB2; HMCN1; THBS2

Location

KhC14 [1,682,609 / 1,687,845]

Sequences

Amino acid sequence

Length: 721

>KH.C14.567.v1.C.nonSL6-1
TVMDKMLYILLLLTVIVVEVAGQQRVVTRECIIKQQVLARTGFCNRGRRRGDTLPCRDFC
SGQIIEGRVACIRARHCCRRRGVCILKQPENFNENAPSIDFHDAELQFNRSFIRTITDRS
PEPSSSRPQQDTRNYAISSSTSFCLTYPNNCIFRPLSMIPRVNIPYCQRIPCSRADFTLD
HNYIGCITTPGCQFDYTLYRYRGVLNQAVLPGVPVCYLAVRNTAYLRRVQEHVSVYGSWN
PLMEDCLLNQYRDEIFGPNQPGCHMVDVLEYYGDAPKLAGWKGITSAECFLIGACWKSDG
KCVYPLQIEQVALNTSTQNLPTGVPSITYYGQPKCQEFNETAASEEFLSQHHKCLKAGCT
SSVDHNLILQHLYTVMTQNLPVDLQYQFWVMAQLGQVRADNWKQSLAGIVNGATNSAGTF
GVIPFRLNVGTLRGNSSTTPRVNFGVIGSGLPGYDLSIPNRPCHYQNVVWPGLPPLNGSF
EGCCDRERCFTPRFALYTQQFSGVASYLDEWSVWSTCSKTCDGGSQSRKRHCVGKTCAMG
PSETRSCGTQPCPVWLPWSQFLPCSKSCGGGVMRRIRLCRSGNCTGLNEQTQSCRTGECP
SFGTWSTWTPCSAQCATGFRFRNRTCLAGGEYGCPPITTEAALCHDYCGTISYTDTPCNA
TTCYATRTFSCLKEDGSPGFCRPNLLIPKEVRCYINNCYCLHFPDQISCVFRSTSLRELE
N

Nucleotide sequence

Length: 2,560

>KH2012:KH.C14.567.v1.C.nonSL6-1
CTTGATAAGTAGTATATAACCCTGGCGTTTATGAATGTAATAGCTAAACTGTAGCTGGAA
GTTTAAAAGGCCAAGCATAAGTTGAACGTGTCAGTTTAGACCAGGTTAGACTGTAATGGA
CAAGATGCTTTACATACTGTTGTTGCTGACTGTTATTGTTGTTGAGGTGGCTGGGCAGCA
ACGTGTTGTTACGAGGGAATGTATTATTAAACAACAAGTTTTAGCGCGGACAGGATTTTG
CAATCGTGGAAGACGACGAGGAGATACGTTGCCTTGTCGAGACTTTTGCTCTGGTCAGAT
TATCGAGGGAAGAGTTGCATGTATCAGAGCACGCCATTGCTGTAGAAGACGAGGTGTTTG
TATACTAAAGCAACCTGAAAATTTTAACGAAAATGCGCCTTCAATCGATTTTCACGATGC
GGAACTTCAATTTAATCGTTCGTTTATTCGCACAATCACTGACCGTTCACCAGAACCCTC
ATCAAGCCGCCCACAGCAAGACACACGAAATTATGCAATAAGTTCTTCGACGTCATTCTG
CCTTACCTACCCAAACAACTGTATTTTTAGACCATTAAGTATGATACCAAGGGTCAATAT
TCCTTATTGTCAAAGAATACCATGCTCTCGAGCTGATTTTACACTTGACCACAACTACAT
TGGTTGCATAACAACTCCCGGCTGTCAGTTCGATTACACGCTTTATCGTTACCGCGGTGT
TTTGAATCAAGCAGTGTTACCTGGTGTACCGGTATGCTACTTGGCGGTTCGTAACACCGC
GTACCTACGACGAGTCCAAGAGCATGTATCAGTGTACGGCTCCTGGAATCCACTTATGGA
AGATTGCTTGCTTAACCAATACAGGGATGAGATATTTGGACCGAATCAGCCGGGTTGTCA
TATGGTTGATGTATTGGAGTATTATGGTGATGCACCAAAATTAGCTGGCTGGAAAGGAAT
AACTTCGGCCGAGTGTTTTCTGATTGGAGCATGCTGGAAATCGGACGGTAAATGTGTATA
CCCTCTTCAAATTGAACAAGTGGCATTGAATACCAGCACACAAAACTTGCCTACAGGTGT
TCCAAGTATAACATATTATGGCCAGCCTAAGTGCCAGGAATTTAATGAAACCGCTGCAAG
CGAGGAGTTTTTGTCACAACACCATAAGTGCTTAAAGGCAGGCTGTACAAGCTCGGTAGA
CCACAATCTTATATTACAACACTTGTACACTGTTATGACGCAGAACCTGCCTGTTGACTT
GCAATACCAGTTTTGGGTGATGGCACAATTAGGGCAGGTTAGAGCGGATAATTGGAAACA
GTCGTTGGCTGGTATTGTGAACGGTGCTACTAACAGCGCTGGCACATTTGGAGTGATCCC
ATTTCGCCTCAATGTGGGCACACTTCGCGGAAACAGCTCAACTACTCCTAGAGTTAACTT
TGGGGTCATCGGAAGCGGTTTGCCTGGGTATGACTTAAGCATTCCTAACCGTCCGTGTCA
CTATCAGAATGTTGTTTGGCCCGGTCTACCGCCTTTGAACGGCAGTTTTGAAGGCTGTTG
CGACCGCGAACGATGTTTTACGCCGCGCTTTGCGTTGTATACCCAACAGTTTTCGGGCGT
CGCTTCTTACCTGGACGAGTGGTCGGTCTGGTCAACCTGTTCTAAAACTTGCGACGGTGG
AAGCCAATCTAGAAAGCGGCATTGTGTGGGGAAAACCTGTGCGATGGGACCAAGTGAAAC
CAGAAGTTGTGGAACACAGCCATGCCCTGTATGGCTCCCTTGGAGTCAGTTTTTGCCGTG
TAGCAAATCTTGCGGCGGTGGGGTTATGCGGCGGATACGTTTATGCCGCAGTGGAAACTG
TACTGGTTTAAATGAGCAAACCCAGTCTTGCAGAACAGGCGAATGTCCGAGTTTTGGAAC
GTGGAGCACCTGGACTCCGTGTAGCGCTCAGTGTGCGACTGGATTTAGATTTCGAAATCG
TACTTGTTTAGCGGGCGGGGAATATGGCTGTCCACCTATCACCACAGAGGCAGCTTTATG
CCATGATTACTGCGGTACGATCTCGTACACGGATACTCCATGCAACGCTACAACTTGTTA
CGCCACGCGAACTTTTAGTTGCTTGAAAGAAGATGGCAGCCCTGGTTTCTGCCGGCCAAA
TTTATTGATACCAAAAGAAGTTCGTTGTTATATTAACAACTGTTACTGCTTACATTTCCC
TGATCAGATCAGCTGCGTTTTTCGCTCGACCAGTTTACGAGAGTTGGAAAATTAACATTA
TTTTACATTCTTAATAGCTGTTTTTTTGCCTTTTATTGCTTTTTGATCATTTACTACACC
GCATTGTACTTTTGACTTAGTTTTTGTCAGTTTTAAATCTTTTCTCATGCTGATTGTTAA
GTGACTATATACTGCAACTAACCGTGCTACTAGTATTCCAACGAAAGTTCCAGGTAAAAA
CAAAGTCCCGATATCTGTACGACAATCGGCACTTTTATTTTTAAAAATGGTTGTCTTAAA
TATTCTTTAAGCATATTAAACAACACCTTTTTTCGTTTTA

InterProScan

ProSiteProfiles
TSP1_rpt (IPR000884) - T[505-553] 12.309 - T[555-600] 10.797 - T[602-649] 8.6
SUPERFAMILY
TSP1_rpt_sf (IPR036383) - T[507-552] 2.22E-9 - T[551-595] 7.19E-8 - T[599-644] 3.92E-8
SMART
TSP1_rpt (IPR000884) - T[508-553] 4.3E-10 - T[555-600] 1.9E-8 - T[602-649] 1.7E-5
Gene3D
TSP1_rpt_sf (IPR036383) - T[508-553] 1.8E-9 - T[554-600] 4.8E-9 - T[601-644] 1.1E-6
Pfam
TSP1_rpt (IPR000884) - T[510-552] 3.9E-6 - T[557-599] 2.0E-6 - T[604-644] 3.0E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HMCN1_HUMAN 36.25 % 96.3 3.02E-20
AGRB2_HUMAN 38.926 % 95.5 4.3E-20
TSP2_HUMAN 39.259 % 87 1.54E-17