Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C14.57.v1.A.nonSL17-1

Possible name(s)

AC079594.2; TRIM13; TRIM59

Gene model

KH2012:KH.C14.57

Location

KhC14 [542,080 / 544,972]

Sequences

Amino acid sequence

Length: 323

>KH.C14.57.v1.A.nonSL17-1
CKVHVNRMAGAKSLKNKLEDDLLTCPICCSLYNDPRVLKCQHSFCHGCLKGSMKAAKSNG
KSINCAVCRKPTPLAKKGLADLPKNYVIIGLSQMVKEHKESGKSPVVAKSSSGKNVGNVK
QLVETFNKKSIVEKPSKKRDKNFNIEVPKAGVVHDDENDDSSDLSTSASDSSGMTEFTPT
DDSESTSSGSDDSSSGSDDSDTDSESDSGSSDDEEPEHVPQRPTIKSSHGIKLGMKVFVF
TAKGKPLPGTVRVLEKYKRKPPNQTQVYAGVQMEKEYKKLTTEDILDMDDSYLFNWLMDF
DQPCVAVRIDQCCPAKVIQRFNL

Nucleotide sequence

Length: 1,104

>KH2012:KH.C14.57.v1.A.nonSL17-1
GATTTCCAGCACGCTGGTAACGTTTGTGCTGCTGTGGTTGAACAGTAGTTAGTGTAAGGT
ACATGTGAACAGGATGGCTGGTGCAAAATCGCTTAAGAATAAGTTGGAGGACGATTTGCT
GACTTGTCCGATTTGCTGCTCGTTGTACAATGATCCAAGAGTGTTGAAATGTCAGCATTC
GTTTTGCCATGGTTGCTTGAAAGGTTCCATGAAAGCAGCAAAATCTAATGGCAAGTCAAT
CAACTGTGCCGTGTGCAGAAAGCCAACACCACTGGCAAAAAAAGGTCTTGCGGATTTGCC
CAAGAATTACGTCATCATCGGGTTATCGCAAATGGTCAAGGAACACAAGGAGAGCGGAAA
GTCGCCCGTGGTCGCAAAATCATCTTCCGGAAAGAATGTTGGTAATGTTAAACAATTGGT
CGAAACGTTCAACAAAAAATCAATCGTTGAAAAACCATCAAAAAAGAGAGATAAGAACTT
CAACATAGAAGTACCAAAAGCTGGTGTTGTCCATGATGATGAAAATGACGACAGTTCGGA
TTTGTCTACAAGTGCTTCGGACTCGTCTGGGATGACAGAATTCACTCCAACCGATGACAG
CGAGTCTACAAGCAGTGGAAGCGATGATAGTAGCAGTGGAAGCGATGATAGCGATACCGA
TAGCGAGAGTGATAGTGGAAGTAGCGACGACGAAGAACCCGAACATGTTCCACAAAGGCC
TACAATAAAAAGCTCTCATGGTATCAAACTTGGTATGAAGGTGTTTGTTTTCACTGCCAA
AGGTAAACCACTCCCAGGGACCGTAAGGGTACTCGAGAAATATAAACGCAAGCCACCAAA
CCAAACGCAAGTGTATGCGGGCGTGCAAATGGAGAAGGAATACAAAAAGTTAACAACAGA
AGATATTTTGGACATGGACGATTCTTATCTCTTCAATTGGTTGATGGACTTCGATCAACC
ATGTGTGGCTGTGAGAATAGACCAATGTTGCCCTGCTAAAGTTATTCAAAGATTTAATCT
ATGATCCGCCAAGCCTTTGTCACCGACCAGTTCACGAAGTTACCTGCTTTTTTGTTTTTC
TTTATTTAAATAAACTATTTGTAT

InterProScan

Gene3D	Znf_RING/FYVE/PHD (IPR013083) - T[13-105] 2.3E-17
Pfam	Znf-RING_LisH (IPR027370) - T[25-65] 7.5E-8
ProSiteProfiles	Znf_RING (IPR001841) - T[25-69] 11.309
SMART	Znf_RING (IPR001841) - T[25-68] 2.9E-7
ProSitePatterns	Znf_RING_CS (IPR017907) - T[40-49] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value