- Transcript 'KH2012:KH.C12.398.v1...' >
- Transcript 'KH2012:KH.C14.578.v3...'
Transcript Model
Transcript Id
KH2012:KH.C14.578.v3.A.ND1-1
Possible name(s)
VPS11; VPS18
Gene model
Location
KhC14 [3,158,342 / 3,172,435]
Amino acid sequence
Length: 954
>KH.C14.578.v3.A.ND1-1
QLCCFCSITLFRMAFTQWRRFTFFNKQAVPTNVAGRSWDTVRDAEMACSTCGRGVLIFGD
SNGFVHMVNHNFQVSTFKAFAITVLHLFQLKQHNMLAAVGIDEDGVNPVIKVWNMDKKDK
FGNPFCCRIQRTIPASNTPSMVTSFCVHENQSFMAVGFAIGSIALYKGDIAKDRTLNRTV
HLMNENEGQITGLSFQGTGKACHLFATTENLVVSFNLQEKLPKKNVLDRRGCSLFCSTMS
DMVMDNHFIVTASDAVYAYQADSRGPCFAFDGEKLMAKWFNGYLVLVYKDKAKNSIPSSS
SMKIPDKNIVTIYDASQKLIAYSSPLPGVQEVLYEWGSLFALVADNNLICLQEIDIQQKL
EMLFKKNLYSLAVNLAKSQDLGKDGLVDIFTQYGDHLYSKGDFDGAIAQYIKTIGHLEPS
YIIRKFLDAQQIRNLTSYLQAMHELGRANEDHTTLLLNCFTKLKDVENLNKFIMTPETEL
HFDVETAIRVCRQAGYYKHALQLAEKHHKHKWYLKIQLEDTHQYRRALSYIRQLPFKEAE
NSLKRYGKTLVNNTPEETTELLKSLCTDYQPSNHPDLGHQSGNVSKSNGVEFIHIFVNSP
NMLVKFLEHLIKVQDKAPETVYNTLLELYLQKMNDPAETKSKSDQEKLTLNLLKEISLKK
YDTDQALLLCQMSNFRPGILFLYEACELYQQILRYHMDHESHGLVVETCRSYGEKDPTLW
QQALTYFARQRDVDCRQHITQVLAHIEKHNLVPPLLVIQMLSKNSTVTLGVVRDYILRRV
RQESEEIEKCEKSISEYQEQTEDMKKHIEQMKTSATIFQETKCAACSYELELPAVHFLCQ
HAFHMHCFESYADSDTECPVCSPKNRKILESLREQEQTLASSMALHEQFNNQLKRSTDGF
SVIADFFSKGVFNKITLVTDSDSSSKGASGGPGSHGIDPTLQKELLMMQQANRR
Nucleotide sequence
Length: 3,693
>KH2012:KH.C14.578.v3.A.ND1-1
CTTGGTGTTTCATTTCTGGTTTATTTTTTAGTGATAAATAACTGCTGGAATCGTATAGAG
AACGGTTCAAAACATTGTTTTTATCAAGAAATAGCAGCTGTGCTGTTTTTGTTCGATTAC
GCTTTTTCGAATGGCTTTTACACAGTGGCGACGTTTTACGTTCTTTAACAAGCAAGCAGT
GCCCACTAACGTGGCTGGACGATCATGGGACACTGTACGAGATGCAGAGATGGCGTGTTC
TACTTGTGGCAGAGGAGTTCTGATTTTCGGAGATAGCAATGGTTTTGTTCACATGGTGAA
CCATAATTTCCAAGTTTCCACTTTCAAAGCATTTGCCATCACTGTTCTACACCTCTTCCA
ATTAAAACAACACAATATGCTCGCAGCAGTTGGGATTGATGAGGATGGTGTGAATCCAGT
GATAAAAGTTTGGAATATGGATAAGAAGGATAAGTTTGGAAACCCATTTTGTTGCAGAAT
TCAACGTACTATACCAGCCAGTAATACACCAAGCATGGTGACTTCATTTTGTGTTCATGA
AAACCAAAGTTTCATGGCTGTTGGATTCGCTATTGGATCTATTGCTTTATATAAAGGAGA
TATTGCTAAGGATAGAACCCTGAACCGGACTGTCCATTTAATGAATGAAAACGAAGGACA
AATAACAGGTCTTAGTTTTCAAGGCACTGGGAAAGCATGTCATCTGTTTGCAACAACAGA
AAACTTAGTTGTTTCGTTTAACTTGCAAGAAAAGCTGCCAAAGAAGAACGTGCTTGACCG
TAGAGGATGCTCTTTATTCTGCAGCACTATGTCCGACATGGTAATGGACAATCACTTTAT
AGTCACAGCTTCTGATGCAGTGTATGCTTATCAAGCTGATTCAAGAGGCCCATGCTTTGC
TTTTGATGGTGAAAAATTAATGGCAAAGTGGTTTAATGGATACCTTGTTCTTGTTTATAA
AGATAAGGCCAAGAACTCCATTCCTTCTTCCAGTTCTATGAAAATACCGGACAAGAATAT
TGTTACAATATATGATGCAAGTCAAAAACTTATTGCATATTCTTCGCCACTACCTGGTGT
ACAAGAGGTGTTATATGAATGGGGATCATTATTTGCACTTGTTGCTGATAATAACTTGAT
TTGTCTGCAAGAAATCGACATACAGCAGAAACTAGAGATGCTGTTTAAGAAAAACCTCTA
TTCCCTGGCTGTTAACTTGGCTAAGAGCCAGGATTTAGGAAAAGATGGTTTGGTTGATAT
CTTTACACAGTACGGTGATCATTTGTACAGCAAGGGTGACTTTGATGGTGCTATAGCTCA
ATATATTAAAACCATTGGCCACCTGGAACCATCATATATTATTAGGAAGTTTCTGGATGC
TCAACAAATTCGTAATCTTACATCATACCTGCAAGCAATGCATGAGTTGGGACGAGCCAA
TGAAGACCACACCACACTGCTGTTGAACTGTTTCACCAAGCTAAAGGATGTAGAAAATCT
CAACAAGTTTATCATGACTCCAGAGACAGAACTTCACTTTGATGTTGAAACTGCAATCCG
TGTTTGTAGACAAGCTGGTTATTATAAACATGCTTTACAACTGGCTGAGAAACATCATAA
ACACAAGTGGTATTTGAAAATCCAATTGGAAGATACTCACCAATATAGACGTGCATTGTC
ATATATACGGCAACTGCCTTTCAAAGAGGCGGAGAACAGTTTAAAAAGATATGGGAAAAC
TCTGGTGAACAACACCCCTGAAGAAACAACTGAGCTGCTGAAATCTTTATGTACAGACTA
TCAGCCTTCTAACCACCCAGATCTTGGTCATCAAAGTGGAAATGTTTCAAAATCAAATGG
AGTCGAATTCATTCATATATTCGTGAACAGTCCTAATATGCTTGTTAAATTCCTTGAGCA
TTTAATAAAGGTACAGGACAAAGCACCAGAAACAGTTTACAATACTTTGTTAGAACTCTA
CCTTCAAAAGATGAATGATCCAGCTGAAACTAAGAGTAAATCTGACCAAGAAAAGCTCAC
ACTGAATCTACTAAAGGAAATATCGTTGAAAAAATATGATACAGACCAAGCTTTACTACT
TTGTCAAATGAGTAACTTTAGGCCTGGTATCTTGTTCTTGTATGAGGCCTGTGAACTGTA
CCAACAGATCCTACGTTATCATATGGACCATGAATCCCATGGTTTAGTTGTTGAGACTTG
TAGGTCTTATGGAGAGAAAGACCCAACATTGTGGCAACAAGCACTTACATATTTTGCTAG
ACAAAGAGATGTGGATTGCAGACAGCACATCACACAAGTCCTAGCTCATATTGAAAAGCA
TAATCTGGTTCCACCATTACTGGTTATTCAGATGCTTTCAAAGAATTCTACAGTTACTTT
GGGAGTTGTTAGGGATTATATATTAAGAAGGGTTCGACAGGAAAGTGAAGAAATTGAAAA
ATGTGAAAAATCAATTTCTGAATATCAAGAACAAACCGAAGATATGAAAAAACACATTGA
ACAAATGAAAACAAGTGCCACAATATTTCAAGAAACAAAGTGTGCAGCATGCTCTTATGA
ACTTGAATTACCCGCTGTACATTTTCTCTGCCAGCATGCCTTTCATATGCATTGCTTTGA
AAGCTATGCTGACAGTGACACAGAATGTCCTGTGTGTTCTCCAAAAAATCGAAAGATCTT
GGAAAGTTTACGAGAACAAGAACAGACTCTTGCAAGTAGTATGGCATTGCATGAGCAATT
CAACAATCAACTGAAACGTTCTACAGATGGTTTCTCTGTAATTGCAGACTTCTTTTCCAA
AGGAGTTTTTAACAAGATTACTTTGGTAACTGACAGCGACTCAAGCTCAAAGGGAGCATC
TGGTGGCCCTGGATCCCATGGTATTGATCCAACATTACAGAAAGAGTTGTTAATGATGCA
GCAAGCAAACCGCAGATAATTTAATTATTCCCCTACCAGTTCTATTGCAATTACTCATTG
AATTGAATATATAGACAGTATATCATGTGTGAGCCATTTTTAATATATAGTAGGGTGGGG
GAAGAGGGGACACGGACACCTTTAGCATATTATATGGTAATATCCTGATAAGGTTTTAAA
TAATTAATAACGGTCTATGGGAGTTGTGAGGATACGATTTTATAACTCTTTGAGTTGACT
ACCAAATGGAAAACCCATCTTCCTCCACCCTACTGTATATACAATTCTAAGCCTATACAC
CCAGAGGTTTTGGGTTCAAGGTGCTTCAATGCTACCATTGTGGGCGAATGTGTCTTTGGG
CAGGACATTTAACGCTAATTGCTTCAACCCAGTGGTCACTAATGGGTTGTCTAAATTGGC
AGTCATTCATAAAAACTAAAAAAAATTAAAAAAACTGTTTTACTAGAACTATATATTATA
ATAAATTCAGTTTATATTGTAAGGTATTCACGTATTATACTACCACTACCCAATAAGTAA
ATCACAAACTGATTCATTATAAGTAATAATATAAATCATCCCATTAAACATTACATAACT
ATTTACTTGATTTTCTGCTTCGGAAATTTTTGTAATAAAATTCTCAATGTTTATTTATCA
CAAAACAACTTTGGAAAATATTATACAAATGTTGTTATACGCCTTGTTCAATTCTTTTGT
TGTTGTGCAATTGCAATAAATATGTAACCTATC
| PIRSF |
VPS11 (IPR016528) - T[13-589] 5.1E-179 - T[578-920] 9.4E-100 |
| PANTHER |
VPS11 (IPR016528) - T[13-928] 0.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[43-281] 2.8E-6 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[46-302] 1.83E-10 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[347-655] 2.7E-13 |
| SUPERFAMILY |
ARM-type_fold (IPR016024) - T[363-629] 1.92E-6 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[410-559] 29.349 - T[577-736] 19.57 |
| Pfam |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[418-534] 1.2E-11 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[795-869] 2.5E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[823-862] 10.424 |
| Pfam |
VPS11_C (IPR024763) - T[865-913] 8.5E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS11_HUMAN | 48.95 % | 937 | 0 |