- Transcript 'KH2012:KH.C1.459.v3....'
Transcript Model
Transcript Id
KH2012:KH.C1.459.v3.A.SL1-1
Possible name(s)
SNX18; SNX33; SNX9
Gene model
Location
KhC1 [6,327,224 / 6,336,441]
Amino acid sequence
Length: 639
>KH.C1.459.v3.A.SL1-1
NLELQRFYKGERNQYHQVLTQTNRTFVFDMDVVVTLYEFEGDVNNGELCFGPGERITVTN
KDVGEGWWEGQKDDGTSGLFPETYVEPANSNEATNSYYPPEQAPHSDPTLDPSDPFGLPP
PAPSELSDMDDFFGLGFAPQPSSGGNKLSDDVTSPFTADEEDILGLGDPIVKSWEEPQVA
VEASAPVEQSTNNDWADDWTNQAPQQQQQNVSPTHSQRSQGSIVNSAGLGSPVKRTDRKT
TVKLGNFISSLTKTAVESFVLGETNLEVPASSMVQVISGLDGPMWENNPHPFTCTVTNPV
KESKFSGLKSFIAYTITPSHTDVAVLRRFKHFDWLYEQLVRKYGVSISVPQLPDKQITGR
YEDDFIEGRRVQLQTWLCRIALHPVISCSDVFGHFVTSKDDEKAWKQGKRKAEKDEAVGG
GFFQAINTPDQKMDFTIAEQTLDTHSKFTRGMDEACKQLIIVGQDQAKKFPQVYKKDTQR
LGQLFSTLGECFELDNRPVSAPLTEAIKHTGQVYEAVGELYGNQPTYDWNPLLEGLNEYH
GVLATFPAILGNQRNALDKLKEVRRLQLENKVTVDEMEDVATRTEKISYAVEAEVNHFQH
YRVGDFVGYMKDFVQQQISFHQEIVKKLQDTAVLYEELM
Nucleotide sequence
Length: 2,980
>KH2012:KH.C1.459.v3.A.SL1-1
ATTTTGCATGGTGTTAGCTCTTCTCTTTCTGCTTAAAATTTGGAGTTACAAAGATTTTAC
AAAGGTGAGAGAAACCAATACCATCAAGTGCTAACACAGACCAACAGAACTTTTGTCTTT
GACATGGACGTTGTAGTTACTTTGTATGAGTTCGAGGGAGATGTAAATAATGGAGAACTA
TGTTTTGGACCAGGAGAACGAATTACTGTCACAAATAAGGATGTGGGTGAAGGGTGGTGG
GAAGGCCAAAAAGATGACGGGACTTCAGGATTGTTTCCAGAGACTTATGTCGAGCCGGCC
AACAGCAATGAAGCTACAAATAGTTACTATCCCCCTGAACAAGCACCACATTCTGACCCC
ACTTTAGACCCATCCGATCCATTTGGGTTACCACCACCTGCTCCATCTGAGCTTTCTGAC
ATGGATGATTTTTTTGGTCTTGGATTTGCGCCACAGCCTTCCAGCGGTGGCAACAAGCTT
TCTGATGATGTTACAAGCCCCTTTACTGCAGATGAAGAGGACATATTGGGCCTTGGTGAT
CCTATAGTAAAGAGCTGGGAAGAGCCACAAGTTGCGGTAGAAGCTTCTGCTCCAGTCGAA
CAAAGCACAAACAATGATTGGGCCGATGATTGGACCAACCAAGCACCACAGCAACAGCAA
CAAAATGTGTCACCCACCCACTCACAGAGGTCGCAGGGATCTATTGTTAATTCAGCGGGG
TTAGGCTCCCCTGTTAAAAGAACTGACAGGAAAACAACTGTCAAACTTGGAAATTTCATA
TCCTCCCTTACAAAGACAGCGGTTGAGTCATTTGTTTTGGGCGAAACCAACCTGGAAGTT
CCTGCATCTTCGATGGTACAAGTTATTTCTGGATTAGATGGACCAATGTGGGAAAATAAT
CCCCACCCATTCACATGCACAGTCACCAACCCAGTGAAGGAAAGCAAGTTTTCCGGCTTA
AAAAGTTTTATAGCTTACACCATAACACCATCACACACAGACGTTGCAGTGCTACGTAGA
TTCAAACACTTTGATTGGCTTTATGAGCAACTAGTTAGAAAGTATGGAGTGTCTATATCA
GTTCCACAACTGCCGGACAAGCAAATAACAGGGAGATATGAAGATGATTTTATTGAAGGA
AGAAGGGTCCAGCTGCAAACATGGTTGTGTAGGATCGCACTTCATCCTGTCATATCTTGT
TCAGATGTGTTCGGTCACTTTGTAACATCCAAAGATGATGAAAAAGCATGGAAGCAAGGC
AAACGTAAAGCTGAGAAAGATGAAGCAGTTGGTGGAGGATTCTTCCAAGCCATCAATACT
CCCGATCAAAAGATGGATTTCACAATCGCAGAACAGACATTGGACACACACAGTAAATTC
ACCCGTGGTATGGATGAAGCTTGCAAACAACTTATTATAGTTGGGCAAGACCAAGCTAAG
AAGTTTCCCCAGGTGTACAAGAAAGACACCCAAAGACTTGGTCAACTTTTCTCAACACTT
GGTGAATGCTTCGAGCTTGACAACAGGCCAGTGTCTGCCCCACTGACCGAGGCAATTAAA
CATACGGGTCAAGTATATGAAGCTGTTGGTGAATTATATGGTAATCAACCTACGTATGAT
TGGAATCCATTACTTGAGGGATTGAATGAATATCACGGAGTGTTGGCCACATTTCCTGCC
ATACTTGGAAACCAAAGGAATGCATTGGATAAATTAAAAGAAGTCCGGAGGTTGCAACTT
GAGAACAAAGTGACGGTTGATGAGATGGAAGATGTTGCTACGAGGACTGAGAAGATCAGT
TACGCTGTAGAAGCTGAGGTGAACCACTTCCAGCACTACAGAGTTGGGGATTTTGTCGGG
TATATGAAGGATTTTGTGCAGCAGCAAATATCATTTCACCAAGAGATTGTCAAAAAGCTT
CAAGACACAGCTGTGTTATACGAAGAGTTAATGTAGTAATTCACATGACCTTTACATGGC
CTACATGCCTGCCATTGCAAATTAGACTATCCTGCATCACCGCAAAGCAGTCTATGACAT
CTAACACCGTGTTTTAAACCTTGTTTGATTCTCTACTTTGTAGAACATTCATTATAATGT
CATAATGCAGTGCAAAGCTTTTAAATTTTTCTTCCATTAAAGTAACAAACAATTTTTAAT
TTTTTCATTGAACATTTGATTACAGTGTTACTTAATGTAAAATAGAATCCTTAATTTTTC
TTCCATTAAAGTAACAAACAATTTTTAATTTTTTCATTGAAATTTTGATTACAGTGTTAC
TTAATGTAAAATAGAATCCTTCCTATCACATATTGTAAGTTTGTGATTTCTTCAAATGCT
TTGATGCCATTATTCATGAGAATGCAATTTTGCTGTTCAAAACCAAAAAAAACGAACATC
TGATTTTTTTGTTTGTTGTTTTTGTCCCGTACTTCATTGAATAACTTTCTAAATGACCTA
ATGTTATGCATTTGATCACATGCTACGTCCCCCATTTTTGTCAAGTTCCGGTTTGCAGCT
TTGTTTTTATATGAGATTTTAACTGTTAACAAAGTGATTGACGTCCATTCAATTTGAAAT
GATGCCTCAGTCGACTATCTTTGCGCAGTCTTCTTTATTTCATTGCATGCTCAACACTGC
AGATCTAGGTCATATGTCACCACAAACGTAAAGTCCCTGATTCGATTTCAAATCCGAATT
TCCAAATTACGTCATTTTTATTTCTAGTGACTTTCTCATCTGATTCTTTCAAAACTTAGT
CATCTGATTCTTTCAAAATACTGACCAATCGATTTTAAATACCTTTTTTCTCACCTCTGC
AGCCAGTCTTTAAATCTGTAATGAGTGACCGCAGTTTTATAAATGAATGCGAGCTACTAA
CTCAAAATTATTTTGCTTGCCCACATATAAGCTTATGACGTGCAATATACATATTATATA
ACGCTTGTTGAACTATCTAATTAAAATATATCGATCTTTG
| ProSiteProfiles |
SH3_domain (IPR001452) - T[28-90] 14.956 |
| SUPERFAMILY |
SH3-like_dom_sf (IPR036028) - T[30-110] 7.35E-17 |
| SMART |
SH3_domain (IPR001452) - T[31-89] 5.1E-15 |
| PRINTS |
SH3_domain (IPR001452) - T[31-41] 9.5E-6 - T[46-61] 9.5E-6 - T[64-73] 9.5E-6 - T[76-88] 9.5E-6 |
| Pfam |
SH3_domain (IPR001452) - T[36-86] 7.3E-10 |
| Gene3D |
PX_dom_sf (IPR036871) - T[270-406] 3.6E-39 |
| SUPERFAMILY |
PX_dom_sf (IPR036871) - T[287-400] 9.03E-26 |
| SMART |
Phox (IPR001683) - T[289-399] 3.7E-18 |
| ProSiteProfiles |
Phox (IPR001683) - T[292-402] 16.589 |
| Pfam |
Phox (IPR001683) - T[295-398] 6.3E-17 |
| Pfam |
Sorting_nexin_WASP-bd-dom (IPR019497) - T[401-635] 9.3E-69 |
| Gene3D |
AH/BAR_dom_sf (IPR027267) - T[448-638] 1.8E-65 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNX33_HUMAN | 34.102 % | 347 | 9.45E-112 |
| SNX9_HUMAN | 36.855 % | 290 | 5.84E-90 |
| SNX18_HUMAN | 45.794 % | 284 | 3.22E-87 |