- Transcript 'KH2012:KH.C5.392.v2....' >
- Transcript 'KH2012:KH.C9.335.v1....' >
- Transcript 'KH2012:KH.L4.55.v1.A...' >
- Transcript 'KH2012:KH.C5.298.v1....' >
- Transcript 'KH2012:KH.C1.567.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.567.v1.A.nonSL13-1
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
KhC1 [2,609,983 / 2,614,667]
Amino acid sequence
Length: 354
>KH.C1.567.v1.A.nonSL13-1
EKVAEPLLWELFLQAGVVVSTHMPKDRISGSHQGYGFVEFLAEEDADYAIKILNMIKLYG
KPIRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNS
KGYAFINFASFEASDAAMEAMNGQHLCNRPISISYAFKKDSKGERHGGAAERLLAVQNPL
SQADRPHTMFADAPSEMPTPLDLAHMDMGMPPPPMSMPGMPPIGPPMLPPMGMPPGPMPP
HPPMGLPPMHGGPPMPPSSMDQSGAMNNQMSWGNPGMGPPNMMPNNGPPMGMGGPRMGNQ
FQPRGPPPPMGPPMGPPMPWGPPQNMFDGGMHGPPMRGPPPNMGGPPMHNMMQR
Nucleotide sequence
Length: 1,272
>KH2012:KH.C1.567.v1.A.nonSL13-1
GAAAAAGTAGCAGAACCATTGCTGTGGGAACTGTTTCTACAAGCAGGAGTGGTGGTTAGC
ACTCATATGCCAAAGGATCGTATATCTGGCAGCCACCAGGGTTATGGTTTCGTCGAATTT
CTTGCAGAAGAAGATGCAGATTATGCGATAAAGATATTAAATATGATAAAACTTTATGGG
AAACCTATACGAGTGAATAAGGCATCTTCACATCAAAAGAACTTGGATGTTGGCGCAAAT
CTTTTTATTGGAAACCTTGATCCTGAAATTGATGAAAAACTTTTATACGACACTTTCAGT
GCATTTGGTGTTATACTTCAAACACCCAAGATCATGCGAGACCCAGACACAGGAAACTCA
AAGGGTTATGCGTTCATAAACTTTGCGAGTTTTGAAGCTTCTGACGCTGCCATGGAAGCA
ATGAATGGACAACATCTCTGTAATCGTCCCATCAGTATTTCATACGCATTTAAAAAGGAT
TCAAAAGGAGAAAGGCATGGTGGAGCAGCAGAGAGACTCCTAGCAGTGCAGAACCCACTG
TCACAAGCTGACAGACCTCACACAATGTTTGCTGATGCTCCAAGTGAGATGCCCACCCCG
TTAGACCTCGCACACATGGATATGGGAATGCCTCCACCCCCCATGTCTATGCCAGGCATG
CCACCTATTGGGCCACCTATGTTACCCCCCATGGGTATGCCCCCTGGCCCCATGCCGCCC
CACCCACCCATGGGACTTCCCCCAATGCATGGAGGGCCCCCTATGCCCCCTTCGTCAATG
GACCAGTCTGGTGCTATGAACAACCAAATGAGTTGGGGCAACCCAGGCATGGGTCCTCCT
AATATGATGCCCAACAATGGACCCCCAATGGGAATGGGTGGTCCAAGAATGGGTAACCAA
TTCCAACCTCGAGGCCCCCCACCCCCTATGGGGCCTCCGATGGGCCCCCCGATGCCATGG
GGCCCGCCCCAAAATATGTTCGACGGGGGTATGCATGGTCCCCCAATGCGGGGTCCACCC
CCGAATATGGGGGGTCCACCCATGCATAATATGATGCAGAGATGAGTTTTAGGCGTTCAT
TGTTGAGGAACAACTTACATTATGACGTCATAGTAACTCTGCTGATCGTTTTACTTCATT
GGAAAATTTCAGTTCGAATGTTCGAGTAAATTGTGAATGTAATGATGAGATAATAAAAAA
GACGAGCGACTCGATTGTGCATGTTCTGTAGTCGACACATATAAAAAGTGCGTATTTACT
GTTTTATCAGCT
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-70] 13.891 - T[79-158] 17.165 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[1-67] 9.24829E-45 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-73] 1.5E-18 - T[74-166] 5.3E-25 |
| SMART |
RRM_dom (IPR000504) - T[1-66] 3.1E-7 - T[80-154] 4.4E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[3-162] 4.69E-42 |
| Pfam |
RRM_dom (IPR000504) - T[5-64] 2.3E-10 - T[81-151] 2.0E-19 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[78-160] 2.02218E-60 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 89.474 % | 364 | 1.36E-124 |
| PABP1_HUMAN | 37.209 % | 111 | 6.66E-27 |
| PABP4_HUMAN | 39.535 % | 114 | 9.41E-28 |