- Transcript 'KH2012:KH.C1.567.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.567.v1.A.nonSL6-1
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
KhC1 [2,609,983 / 2,614,710]
Amino acid sequence
Length: 368
>KH.C1.567.v1.A.nonSL6-1
FTFSDATVYVGGLDEKVAEPLLWELFLQAGVVVSTHMPKDRISGSHQGYGFVEFLAEEDA
DYAIKILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVIL
QTPKIMRDPDTGNSKGYAFINFASFEASDAAMEAMNGQHLCNRPISISYAFKKDSKGERH
GGAAERLLAVQNPLSQADRPHTMFADAPSEMPTPLDLAHMDMGMPPPPMSMPGMPPIGPP
MLPPMGMPPGPMPPHPPMGLPPMHGGPPMPPSSMDQSGAMNNQMSWGNPGMGPPNMMPNN
GPPMGMGGPRMGNQFQPRGPPPPMGPPMGPPMPWGPPQNMFDGGMHGPPMRGPPPNMGGP
PMHNMMQR
Nucleotide sequence
Length: 1,315
>KH2012:KH.C1.567.v1.A.nonSL6-1
ATTCACATTTTCAGATGCTACTGTATACGTCGGAGGTTTAGACGAAAAAGTAGCAGAACC
ATTGCTGTGGGAACTGTTTCTACAAGCAGGAGTGGTGGTTAGCACTCATATGCCAAAGGA
TCGTATATCTGGCAGCCACCAGGGTTATGGTTTCGTCGAATTTCTTGCAGAAGAAGATGC
AGATTATGCGATAAAGATATTAAATATGATAAAACTTTATGGGAAACCTATACGAGTGAA
TAAGGCATCTTCACATCAAAAGAACTTGGATGTTGGCGCAAATCTTTTTATTGGAAACCT
TGATCCTGAAATTGATGAAAAACTTTTATACGACACTTTCAGTGCATTTGGTGTTATACT
TCAAACACCCAAGATCATGCGAGACCCAGACACAGGAAACTCAAAGGGTTATGCGTTCAT
AAACTTTGCGAGTTTTGAAGCTTCTGACGCTGCCATGGAAGCAATGAATGGACAACATCT
CTGTAATCGTCCCATCAGTATTTCATACGCATTTAAAAAGGATTCAAAAGGAGAAAGGCA
TGGTGGAGCAGCAGAGAGACTCCTAGCAGTGCAGAACCCACTGTCACAAGCTGACAGACC
TCACACAATGTTTGCTGATGCTCCAAGTGAGATGCCCACCCCGTTAGACCTCGCACACAT
GGATATGGGAATGCCTCCACCCCCCATGTCTATGCCAGGCATGCCACCTATTGGGCCACC
TATGTTACCCCCCATGGGTATGCCCCCTGGCCCCATGCCGCCCCACCCACCCATGGGACT
TCCCCCAATGCATGGAGGGCCCCCTATGCCCCCTTCGTCAATGGACCAGTCTGGTGCTAT
GAACAACCAAATGAGTTGGGGCAACCCAGGCATGGGTCCTCCTAATATGATGCCCAACAA
TGGACCCCCAATGGGAATGGGTGGTCCAAGAATGGGTAACCAATTCCAACCTCGAGGCCC
CCCACCCCCTATGGGGCCTCCGATGGGCCCCCCGATGCCATGGGGCCCGCCCCAAAATAT
GTTCGACGGGGGTATGCATGGTCCCCCAATGCGGGGTCCACCCCCGAATATGGGGGGTCC
ACCCATGCATAATATGATGCAGAGATGAGTTTTAGGCGTTCATTGTTGAGGAACAACTTA
CATTATGACGTCATAGTAACTCTGCTGATCGTTTTACTTCATTGGAAAATTTCAGTTCGA
ATGTTCGAGTAAATTGTGAATGTAATGATGAGATAATAAAAAAGACGAGCGACTCGATTG
TGCATGTTCTGTAGTCGACACATATAAAAAGTGCGTATTTACTGTTTTATCAGCT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[3-88] 4.6E-24 - T[89-180] 7.0E-25 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[6-84] 17.08 - T[93-172] 17.165 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[6-176] 5.27E-47 |
| SMART |
RRM_dom (IPR000504) - T[7-80] 1.9E-20 - T[94-168] 4.4E-24 |
| Pfam |
RRM_dom (IPR000504) - T[8-78] 8.3E-14 - T[95-165] 2.1E-19 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[8-81] 8.3084E-51 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[92-174] 7.87455E-60 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 90 % | 384 | 3.32E-132 |
| PABP1_HUMAN | 37.705 % | 119 | 1.84E-29 |
| PABP4_HUMAN | 39.891 % | 123 | 7.02E-31 |