- Transcript 'KH2012:KH.S787.3.v2....' >
- Transcript 'KH2012:KH.C1.753.v1....' >
- Transcript 'KH2012:KH.C1.567.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.567.v1.A.SL1-1
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
KhC1 [2,609,983 / 2,614,696]
Amino acid sequence
Length: 363
>KH.C1.567.v1.A.SL1-1
ATVYVGGLDEKVAEPLLWELFLQAGVVVSTHMPKDRISGSHQGYGFVEFLAEEDADYAIK
ILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKI
MRDPDTGNSKGYAFINFASFEASDAAMEAMNGQHLCNRPISISYAFKKDSKGERHGGAAE
RLLAVQNPLSQADRPHTMFADAPSEMPTPLDLAHMDMGMPPPPMSMPGMPPIGPPMLPPM
GMPPGPMPPHPPMGLPPMHGGPPMPPSSMDQSGAMNNQMSWGNPGMGPPNMMPNNGPPMG
MGGPRMGNQFQPRGPPPPMGPPMGPPMPWGPPQNMFDGGMHGPPMRGPPPNMGGPPMHNM
MQR
Nucleotide sequence
Length: 1,301
>KH2012:KH.C1.567.v1.A.SL1-1
ATGCTACTGTATACGTCGGAGGTTTAGACGAAAAAGTAGCAGAACCATTGCTGTGGGAAC
TGTTTCTACAAGCAGGAGTGGTGGTTAGCACTCATATGCCAAAGGATCGTATATCTGGCA
GCCACCAGGGTTATGGTTTCGTCGAATTTCTTGCAGAAGAAGATGCAGATTATGCGATAA
AGATATTAAATATGATAAAACTTTATGGGAAACCTATACGAGTGAATAAGGCATCTTCAC
ATCAAAAGAACTTGGATGTTGGCGCAAATCTTTTTATTGGAAACCTTGATCCTGAAATTG
ATGAAAAACTTTTATACGACACTTTCAGTGCATTTGGTGTTATACTTCAAACACCCAAGA
TCATGCGAGACCCAGACACAGGAAACTCAAAGGGTTATGCGTTCATAAACTTTGCGAGTT
TTGAAGCTTCTGACGCTGCCATGGAAGCAATGAATGGACAACATCTCTGTAATCGTCCCA
TCAGTATTTCATACGCATTTAAAAAGGATTCAAAAGGAGAAAGGCATGGTGGAGCAGCAG
AGAGACTCCTAGCAGTGCAGAACCCACTGTCACAAGCTGACAGACCTCACACAATGTTTG
CTGATGCTCCAAGTGAGATGCCCACCCCGTTAGACCTCGCACACATGGATATGGGAATGC
CTCCACCCCCCATGTCTATGCCAGGCATGCCACCTATTGGGCCACCTATGTTACCCCCCA
TGGGTATGCCCCCTGGCCCCATGCCGCCCCACCCACCCATGGGACTTCCCCCAATGCATG
GAGGGCCCCCTATGCCCCCTTCGTCAATGGACCAGTCTGGTGCTATGAACAACCAAATGA
GTTGGGGCAACCCAGGCATGGGTCCTCCTAATATGATGCCCAACAATGGACCCCCAATGG
GAATGGGTGGTCCAAGAATGGGTAACCAATTCCAACCTCGAGGCCCCCCACCCCCTATGG
GGCCTCCGATGGGCCCCCCGATGCCATGGGGCCCGCCCCAAAATATGTTCGACGGGGGTA
TGCATGGTCCCCCAATGCGGGGTCCACCCCCGAATATGGGGGGTCCACCCATGCATAATA
TGATGCAGAGATGAGTTTTAGGCGTTCATTGTTGAGGAACAACTTACATTATGACGTCAT
AGTAACTCTGCTGATCGTTTTACTTCATTGGAAAATTTCAGTTCGAATGTTCGAGTAAAT
TGTGAATGTAATGATGAGATAATAAAAAAGACGAGCGACTCGATTGTGCATGTTCTGTAG
TCGACACATATAAAAAGTGCGTATTTACTGTTTTATCAGCT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-83] 1.2E-23 - T[84-175] 5.5E-25 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-79] 17.08 - T[88-167] 17.165 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[2-171] 8.79E-47 |
| SMART |
RRM_dom (IPR000504) - T[2-75] 1.9E-20 - T[89-163] 4.4E-24 |
| Pfam |
RRM_dom (IPR000504) - T[3-73] 8.1E-14 - T[90-160] 2.1E-19 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[3-76] 7.30648E-51 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[87-169] 2.64277E-60 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 89.95 % | 382 | 1.88E-131 |
| PABP1_HUMAN | 37.705 % | 119 | 1.42E-29 |
| PABP4_HUMAN | 39.891 % | 123 | 6.28E-31 |