- Transcript 'KH2012:KH.C1.567.v2....'
Transcript Model
Transcript Id
KH2012:KH.C1.567.v2.A.nonSL11-1
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
KhC1 [2,609,983 / 2,614,869]
Amino acid sequence
Length: 384
>KH.C1.567.v2.A.nonSL11-1
TKSVSLPKIMAAGPISERNQDATVYVGGLDEKVAEPLLWELFLQAGVVVSTHMPKDRISG
SHQGYGFVEFLAEEDADYAIKILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEI
DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEASDAAMEAMNGQHLCNRP
ISISYAFKKDSKGERHGGAAERLLAVQNPLSQADRPHTMFADAPSEMPTPLDLAHMDMGM
PPPPMSMPGMPPIGPPMLPPMGMPPGPMPPHPPMGLPPMHGGPPMPPSSMDQSGAMNNQM
SWGNPGMGPPNMMPNNGPPMGMGGPRMGNQFQPRGPPPPMGPPMGPPMPWGPPQNMFDGG
MHGPPMRGPPPNMGGPPMHNMMQR
Nucleotide sequence
Length: 1,374
>KH2012:KH.C1.567.v2.A.nonSL11-1
GTAAAATTTTAAACAAAAAGCGTTTCACTGCCCAAAATAATGGCTGCTGGCCCGATTTCT
GAACGTAATCAAGATGCTACTGTATACGTCGGAGGTTTAGACGAAAAAGTAGCAGAACCA
TTGCTGTGGGAACTGTTTCTACAAGCAGGAGTGGTGGTTAGCACTCATATGCCAAAGGAT
CGTATATCTGGCAGCCACCAGGGTTATGGTTTCGTCGAATTTCTTGCAGAAGAAGATGCA
GATTATGCGATAAAGATATTAAATATGATAAAACTTTATGGGAAACCTATACGAGTGAAT
AAGGCATCTTCACATCAAAAGAACTTGGATGTTGGCGCAAATCTTTTTATTGGAAACCTT
GATCCTGAAATTGATGAAAAACTTTTATACGACACTTTCAGTGCATTTGGTGTTATACTT
CAAACACCCAAGATCATGCGAGACCCAGACACAGGAAACTCAAAGGGTTATGCGTTCATA
AACTTTGCGAGTTTTGAAGCTTCTGACGCTGCCATGGAAGCAATGAATGGACAACATCTC
TGTAATCGTCCCATCAGTATTTCATACGCATTTAAAAAGGATTCAAAAGGAGAAAGGCAT
GGTGGAGCAGCAGAGAGACTCCTAGCAGTGCAGAACCCACTGTCACAAGCTGACAGACCT
CACACAATGTTTGCTGATGCTCCAAGTGAGATGCCCACCCCGTTAGACCTCGCACACATG
GATATGGGAATGCCTCCACCCCCCATGTCTATGCCAGGCATGCCACCTATTGGGCCACCT
ATGTTACCCCCCATGGGTATGCCCCCTGGCCCCATGCCGCCCCACCCACCCATGGGACTT
CCCCCAATGCATGGAGGGCCCCCTATGCCCCCTTCGTCAATGGACCAGTCTGGTGCTATG
AACAACCAAATGAGTTGGGGCAACCCAGGCATGGGTCCTCCTAATATGATGCCCAACAAT
GGACCCCCAATGGGAATGGGTGGTCCAAGAATGGGTAACCAATTCCAACCTCGAGGCCCC
CCACCCCCTATGGGGCCTCCGATGGGCCCCCCGATGCCATGGGGCCCGCCCCAAAATATG
TTCGACGGGGGTATGCATGGTCCCCCAATGCGGGGTCCACCCCCGAATATGGGGGGTCCA
CCCATGCATAATATGATGCAGAGATGAGTTTTAGGCGTTCATTGTTGAGGAACAACTTAC
ATTATGACGTCATAGTAACTCTGCTGATCGTTTTACTTCATTGGAAAATTTCAGTTCGAA
TGTTCGAGTAAATTGTGAATGTAATGATGAGATAATAAAAAAGACGAGCGACTCGATTGT
GCATGTTCTGTAGTCGACACATATAAAAAGTGCGTATTTACTGTTTTATCAGCT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[14-104] 8.3E-25 - T[105-196] 6.1E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[21-192] 4.53E-47 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[22-100] 17.08 - T[109-188] 17.165 |
| SMART |
RRM_dom (IPR000504) - T[23-96] 1.9E-20 - T[110-184] 4.4E-24 |
| Pfam |
RRM_dom (IPR000504) - T[24-94] 8.9E-14 - T[111-181] 2.3E-19 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[24-97] 1.24181E-50 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[108-190] 3.39152E-60 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 90.521 % | 406 | 1.64E-140 |
| PABP1_HUMAN | 37.705 % | 119 | 2.03E-29 |
| PABP4_HUMAN | 39.891 % | 123 | 9.17E-31 |