- Transcript 'KH2012:KH.C12.460.v1...' >
- Transcript 'Haaura.CG.MTP2014.S6...' >
- Transcript 'KH2012:KH.L153.21.v2...' >
- Transcript 'KH2012:KH.C12.219.v2...' >
- Transcript 'KH2012:KH.C1.567.v2....'
Transcript Model
Transcript Id
KH2012:KH.C1.567.v2.A.nonSL5-1
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
KhC1 [2,609,983 / 2,614,855]
Amino acid sequence
Length: 383
>KH.C1.567.v2.A.nonSL5-1
KSVSLPKIMAAGPISERNQDATVYVGGLDEKVAEPLLWELFLQAGVVVSTHMPKDRISGS
HQGYGFVEFLAEEDADYAIKILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEID
EKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEASDAAMEAMNGQHLCNRPI
SISYAFKKDSKGERHGGAAERLLAVQNPLSQADRPHTMFADAPSEMPTPLDLAHMDMGMP
PPPMSMPGMPPIGPPMLPPMGMPPGPMPPHPPMGLPPMHGGPPMPPSSMDQSGAMNNQMS
WGNPGMGPPNMMPNNGPPMGMGGPRMGNQFQPRGPPPPMGPPMGPPMPWGPPQNMFDGGM
HGPPMRGPPPNMGGPPMHNMMQR
Nucleotide sequence
Length: 1,360
>KH2012:KH.C1.567.v2.A.nonSL5-1
AAAAAGCGTTTCACTGCCCAAAATAATGGCTGCTGGCCCGATTTCTGAACGTAATCAAGA
TGCTACTGTATACGTCGGAGGTTTAGACGAAAAAGTAGCAGAACCATTGCTGTGGGAACT
GTTTCTACAAGCAGGAGTGGTGGTTAGCACTCATATGCCAAAGGATCGTATATCTGGCAG
CCACCAGGGTTATGGTTTCGTCGAATTTCTTGCAGAAGAAGATGCAGATTATGCGATAAA
GATATTAAATATGATAAAACTTTATGGGAAACCTATACGAGTGAATAAGGCATCTTCACA
TCAAAAGAACTTGGATGTTGGCGCAAATCTTTTTATTGGAAACCTTGATCCTGAAATTGA
TGAAAAACTTTTATACGACACTTTCAGTGCATTTGGTGTTATACTTCAAACACCCAAGAT
CATGCGAGACCCAGACACAGGAAACTCAAAGGGTTATGCGTTCATAAACTTTGCGAGTTT
TGAAGCTTCTGACGCTGCCATGGAAGCAATGAATGGACAACATCTCTGTAATCGTCCCAT
CAGTATTTCATACGCATTTAAAAAGGATTCAAAAGGAGAAAGGCATGGTGGAGCAGCAGA
GAGACTCCTAGCAGTGCAGAACCCACTGTCACAAGCTGACAGACCTCACACAATGTTTGC
TGATGCTCCAAGTGAGATGCCCACCCCGTTAGACCTCGCACACATGGATATGGGAATGCC
TCCACCCCCCATGTCTATGCCAGGCATGCCACCTATTGGGCCACCTATGTTACCCCCCAT
GGGTATGCCCCCTGGCCCCATGCCGCCCCACCCACCCATGGGACTTCCCCCAATGCATGG
AGGGCCCCCTATGCCCCCTTCGTCAATGGACCAGTCTGGTGCTATGAACAACCAAATGAG
TTGGGGCAACCCAGGCATGGGTCCTCCTAATATGATGCCCAACAATGGACCCCCAATGGG
AATGGGTGGTCCAAGAATGGGTAACCAATTCCAACCTCGAGGCCCCCCACCCCCTATGGG
GCCTCCGATGGGCCCCCCGATGCCATGGGGCCCGCCCCAAAATATGTTCGACGGGGGTAT
GCATGGTCCCCCAATGCGGGGTCCACCCCCGAATATGGGGGGTCCACCCATGCATAATAT
GATGCAGAGATGAGTTTTAGGCGTTCATTGTTGAGGAACAACTTACATTATGACGTCATA
GTAACTCTGCTGATCGTTTTACTTCATTGGAAAATTTCAGTTCGAATGTTCGAGTAAATT
GTGAATGTAATGATGAGATAATAAAAAAGACGAGCGACTCGATTGTGCATGTTCTGTAGT
CGACACATATAAAAAGTGCGTATTTACTGTTTTATCAGCT
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[13-103] 8.3E-25 - T[104-195] 6.0E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[20-191] 4.06E-47 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[21-99] 17.08 - T[108-187] 17.165 |
| SMART |
RRM_dom (IPR000504) - T[22-95] 1.9E-20 - T[109-183] 4.4E-24 |
| CDD |
SF3B4_RRM1 (IPR034158) - T[23-96] 1.21151E-50 |
| Pfam |
RRM_dom (IPR000504) - T[23-93] 8.8E-14 - T[110-180] 2.2E-19 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[107-189] 3.44556E-60 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 90.521 % | 405 | 1.85E-140 |
| PABP1_HUMAN | 37.705 % | 119 | 1.95E-29 |
| PABP4_HUMAN | 39.891 % | 123 | 9.09E-31 |