- EST 'FF727063.1' >
- Region 'REG00000561' >
- Transcript 'KH2012:KH.C9.64.v1.A...' >
- Transcript 'KH2012:KH.C1.727.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.727.v1.A.SL1-1
Possible name(s)
ZIC2; ZIC3; ZIC5
Gene model
Location
KhC1 [6,256,461 / 6,258,829]
Amino acid sequence
Length: 512
>KH.C1.727.v1.A.SL1-1
VAFSAAKLTIKMAFTGTMGYESSAAFALPHPPYEVKDSSISQDVIIPQSYTTFQPHPNIE
QQQLPATQTIWTPCTSSSPPSQYKYQYSAWPTSPSLNFNLPVSFPHHALHSSHQHFFPYT
ALQHPQAEVRVDLTCKWTKPLTNLYENADACQQYPKVDNQHINGEPCNLIFHSMLDLVTH
VGRDHVGGPEHTDHACYWQDCARECKPFKAKYKLINHIRVHTGEKPFQCPYMGCGKVFAR
SENLKIHKRTHTGEKPFSCEFSGCNRRFANSSDRKKHTHVHTTDKPYLCKVNGCDKSYTH
PSSLRKHMKVHESSGDIICDQDMTSAVTSISSILAPDSNNNISHGEASSPEHKIRDQVTS
LSPPALSPSSIGSEAMSSPASTCDDRGPLLPISEVSPFRYSGHSTQREVQKHDTAEPYAV
LPHTPVNNWQFPVSQDQQIITYVANEKSFHPTSANVEPAYTHFSQGAQQPYYPSMHQIQN
TYGHFSTSTSSFHPFSHHTSNTPAVFGPETVF
Nucleotide sequence
Length: 2,085
>KH2012:KH.C1.727.v1.A.SL1-1
AAATTTATAAGTGTGGTAATAGGTGGCCTTTTCTGCAGCTAAACTCACAATCAAAATGGC
CTTTACTGGTACGATGGGATATGAATCGTCTGCGGCGTTCGCTCTTCCGCACCCACCGTA
CGAAGTCAAAGATTCGTCGATCTCCCAAGATGTGATTATTCCGCAGTCGTATACAACGTT
TCAACCCCACCCCAACATTGAACAACAGCAGTTGCCTGCCACGCAAACCATTTGGACCCC
GTGCACCTCAAGCAGTCCCCCAAGCCAGTACAAATACCAGTACAGTGCATGGCCGACCTC
GCCTTCTCTAAACTTCAACCTCCCAGTAAGCTTCCCCCATCACGCCCTGCATTCGTCGCA
TCAGCATTTCTTCCCGTACACTGCGTTGCAGCATCCTCAGGCCGAAGTACGCGTCGACCT
CACCTGTAAATGGACCAAGCCACTAACAAATTTGTACGAGAACGCAGACGCTTGCCAGCA
GTACCCCAAGGTCGACAACCAGCATATCAACGGCGAGCCCTGTAATTTGATTTTTCACAG
TATGCTCGACCTCGTCACACATGTCGGTCGGGACCACGTCGGCGGCCCCGAGCACACCGA
CCATGCTTGCTACTGGCAGGATTGCGCTCGGGAGTGCAAACCGTTCAAGGCAAAATACAA
ACTAATCAACCATATCCGTGTCCACACAGGAGAAAAGCCGTTTCAGTGTCCTTACATGGG
CTGCGGAAAGGTCTTTGCTCGAAGCGAAAACCTGAAGATTCATAAACGAACTCACACTGG
CGAAAAGCCATTCAGTTGCGAATTCTCGGGTTGCAATCGTCGATTTGCGAACAGTTCCGA
TCGGAAGAAACACACGCACGTCCATACAACTGACAAGCCGTATCTGTGCAAGGTTAACGG
TTGTGACAAAAGCTATACTCACCCAAGCTCTCTCCGCAAGCACATGAAGGTGCACGAGTC
CTCTGGTGACATCATATGCGACCAGGATATGACGTCAGCAGTTACGTCAATCTCCTCCAT
TCTGGCGCCGGATAGCAACAACAATATCTCTCACGGGGAAGCGTCATCACCGGAGCACAA
AATTCGCGATCAAGTCACATCACTCTCGCCTCCGGCTCTTTCGCCATCTTCCATCGGAAG
CGAGGCAATGTCTTCTCCTGCATCCACATGCGACGACAGAGGTCCTCTTCTTCCGATATC
GGAGGTCTCGCCATTCCGTTACTCTGGCCATTCAACACAAAGAGAAGTGCAGAAACATGA
TACCGCGGAACCCTATGCTGTGCTACCACATACCCCTGTCAATAACTGGCAGTTCCCTGT
GAGCCAAGATCAGCAGATTATAACATACGTCGCAAACGAAAAATCATTTCATCCCACCAG
CGCCAACGTTGAGCCAGCCTACACCCACTTCTCACAAGGCGCCCAGCAGCCGTATTACCC
CAGTATGCACCAAATTCAGAACACTTACGGTCACTTTAGCACCTCCACCAGTTCGTTTCA
CCCGTTTTCACATCACACATCGAACACACCTGCTGTCTTCGGCCCCGAGACAGTATTTTA
GGGCACGCTGCATGATTTTTTTCTGTGGGTTTTAGTTTTTATTTCACTTCAACCATTCTT
TTAGTTTTGGAGGGCCGCCATTTTGTTTACGCACGTCGTCTCGCACATTCCCACCCACAC
AATTTTATAACATGTATTTGAAGAGCCAATATATATGTGTGTGTATATATTTGGTTATAA
ACTTGCCTTCTCTGCACTTTTTCTTTCCGTTTTGTTTTCCCGGCATCCCAAGCAGTGCCT
TACACAAGTCGTGGCTTACTTTGTAACAAGCTGAACGGCATTTTGTCATTCGCACCTGTG
TTATTTTTCACCTGATTTTTTTTCGCAATATCGTGCCTTCATTCTTAAATTTTATGTTAC
TTGTACCGTTTGAAGTGATTTTATATTCTTTTACACGATTTTCCACTCAGTAACGATTTC
TAATTGTGCTAAAATAATAATATACGCTACGACGTACTAAGTTATAATTTCGTTGTATTT
CCGTTCGCAAACAAGTTTATAAGTAAATAAACGTAAAATTATCCC
| SMART |
Znf_C2H2_type (IPR013087) - T[194-221] 21.0 - T[227-251] 6.8E-5 - T[257-281] 0.05 - T[287-311] 1.1E-4 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[199-226] 10.596 - T[227-256] 16.768 - T[257-286] 12.84 - T[287-316] 11.323 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[208-264] 2.48E-19 - T[268-321] 2.62E-12 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[229-251] . - T[259-281] . - T[289-311] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ZIC2_HUMAN | 65.174 % | 266 | 1.12E-82 |
| ZIC3_HUMAN | 58.85 % | 266 | 1.52E-83 |
| ZIC5_HUMAN | 55.738 % | 268 | 1.89E-82 |