Aniseed - Transcript Card

Transcript 'KH2012:KH.C1.940.v2....'

Transcript Model

Transcript Id

KH2012:KH.C1.940.v2.A.SL1-1

Possible name(s)

YRDC

Gene model

KH2012:KH.C1.940

Location

KhC1 [7,814,410 / 7,816,147]

Sequences

Amino acid sequence

Length: 335

>KH.C1.940.v2.A.SL1-1
FRATYICVLKEFTNCRNSLGFGFTSSRRKLSLTDRCKNSSFKMSTTINCYSSSENESFNT
GSGIIGGYEPAKISSNILPSAMKTKFFKLSHTNDNEDVIESCVRILHRGGIVALPTDTLY
GVACLAQSTEAVEKLYEIKARNPLKPVAICVGDLYKVCQWTRFPQGLIQSVSKTLGLEDQ
LDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPSLNNTLNPKTSLVGIRVPDHKFIKDLTN
RLREPLALTSANVSGEESSLRIEDFRSLWPKLDAVVDDGEVGTRYVNKTLQYAKEGSTVV
QILNDGVSFKILRPGCAYENTVSVLKCKYGLKLTM

Nucleotide sequence

Length: 1,534

>KH2012:KH.C1.940.v2.A.SL1-1
ATTTAGAGCAACTTATATTTGTGTTCTAAAAGAATTTACAAATTGCCGAAACAGTCTTGG
TTTTGGGTTTACTTCTTCTAGAAGGAAGCTATCTCTTACCGACCGTTGTAAAAATAGTAG
TTTTAAAATGTCAACAACAATCAACTGTTACAGTAGTTCTGAAAATGAAAGTTTCAACAC
TGGCAGTGGAATTATAGGCGGTTATGAACCTGCTAAAATATCCAGCAACATTCTGCCTTC
TGCTATGAAAACCAAGTTCTTTAAACTATCTCACACAAATGACAATGAAGATGTGATTGA
AAGTTGTGTTCGAATCCTACATCGTGGAGGAATCGTAGCACTTCCAACTGATACTCTATA
CGGTGTTGCCTGCCTCGCCCAAAGCACTGAAGCTGTTGAAAAACTTTATGAAATCAAAGC
TCGAAACCCGCTGAAGCCCGTAGCCATTTGCGTTGGTGACCTGTACAAAGTTTGCCAGTG
GACACGCTTCCCCCAAGGCCTTATTCAGTCTGTTTCAAAAACCCTTGGTTTAGAAGACCA
GTTAGACTGCCAGCGGCCGTCTTCACCTGGTGTTTTGTATGGTCTTCTTGAAGACTTACT
TCCAGGTCCAGTCACAATAGTTACAGAAAGAAGTCCTTCGTTAAACAACACACTTAATCC
TAAAACGTCTCTCGTTGGTATCAGAGTACCCGACCATAAATTCATTAAAGATCTAACTAA
TCGTCTGCGTGAGCCTTTGGCCCTTACATCTGCAAACGTCAGTGGAGAAGAGTCTTCCCT
AAGAATTGAAGACTTCAGAAGTTTGTGGCCCAAACTTGATGCAGTGGTAGATGACGGCGA
AGTAGGAACAAGATATGTTAACAAGACATTACAATACGCCAAAGAGGGATCCACAGTTGT
ACAGATCTTGAATGATGGTGTCTCATTTAAAATCTTGCGTCCAGGGTGTGCGTATGAAAA
TACTGTTTCTGTTTTAAAGTGTAAATATGGTCTTAAACTCACAATGTAGTTTTGGAACTG
GAACTGTTTCTGAACCAGTCTTAACTGCTTAGTTTTTCTAGTAACTATGTTTTTCTTGTT
TAAACATCTCTAAAACTCTGTTGACAGCAACTGTAAATTTAATACAGCTTTAAGTTTATA
TCAACTAAGTTTGTACGGCTGTATATATTAAAACATATCTACAGTTATTAAAGCACAAAC
TCACAGCAAAAGCAAACCATTGGTGTGCTTGCCTGCTTAAACTACATTACCATAGTATTT
TGCTTTTCCTAAGCGGCTGATGCCTAGTAGCACTAAGTCTTATGCTGCACATTCTGTTTC
CAATTACATTTAGAATCCCATGACACAGTATTGAGTTACAGAAAAAATGCTATCTATTCA
ATTATTTTGTTTTCAACTCTTTGCATTTATGATTTTACCAATTTACAATCACATTCAAAA
CTATCTTTTGTGTTTTCTACCTTACACCAATACACACACGTATTATGTCACACCATTCCA
TGCCTCGAAAATAAAATTCCTGCCTTGCCTAAAA

InterProScan

SUPERFAMILY	DHBP_synth_RibB-like_a/b_dom (IPR017945) - T[86-321] 2.56E-40
ProSiteProfiles	YrdC-like_dom (IPR006070) - T[96-317] 22.79
Pfam	YrdC-like_dom (IPR006070) - T[105-315] 9.3E-40

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
YRDC_HUMAN	43.277 %	179	1.24E-54