Aniseed - Transcript Card

Transcript 'KH2012:KH.C1.940.v2....'

Transcript Model

Transcript Id

KH2012:KH.C1.940.v2.A.SL3-1

Possible name(s)

YRDC

Gene model

KH2012:KH.C1.940

Location

KhC1 [7,814,358 / 7,816,147]

Sequences

Amino acid sequence

Length: 344

>KH.C1.940.v2.A.SL3-1
CLMNSNLARFRATYICVLKEFTNCRNSLGFGFTSSRRKLSLTDRCKNSSFKMSTTINCYS
SSENESFNTGSGIIGGYEPAKISSNILPSAMKTKFFKLSHTNDNEDVIESCVRILHRGGI
VALPTDTLYGVACLAQSTEAVEKLYEIKARNPLKPVAICVGDLYKVCQWTRFPQGLIQSV
SKTLGLEDQLDCQRPSSPGVLYGLLEDLLPGPVTIVTERSPSLNNTLNPKTSLVGIRVPD
HKFIKDLTNRLREPLALTSANVSGEESSLRIEDFRSLWPKLDAVVDDGEVGTRYVNKTLQ
YAKEGSTVVQILNDGVSFKILRPGCAYENTVSVLKCKYGLKLTM

Nucleotide sequence

Length: 1,586

>KH2012:KH.C1.940.v2.A.SL3-1
AAGTAATATCAGTAACACAACACTAATGTTTAATGAATTCGAACCTTGCTAGATTTAGAG
CAACTTATATTTGTGTTCTAAAAGAATTTACAAATTGCCGAAACAGTCTTGGTTTTGGGT
TTACTTCTTCTAGAAGGAAGCTATCTCTTACCGACCGTTGTAAAAATAGTAGTTTTAAAA
TGTCAACAACAATCAACTGTTACAGTAGTTCTGAAAATGAAAGTTTCAACACTGGCAGTG
GAATTATAGGCGGTTATGAACCTGCTAAAATATCCAGCAACATTCTGCCTTCTGCTATGA
AAACCAAGTTCTTTAAACTATCTCACACAAATGACAATGAAGATGTGATTGAAAGTTGTG
TTCGAATCCTACATCGTGGAGGAATCGTAGCACTTCCAACTGATACTCTATACGGTGTTG
CCTGCCTCGCCCAAAGCACTGAAGCTGTTGAAAAACTTTATGAAATCAAAGCTCGAAACC
CGCTGAAGCCCGTAGCCATTTGCGTTGGTGACCTGTACAAAGTTTGCCAGTGGACACGCT
TCCCCCAAGGCCTTATTCAGTCTGTTTCAAAAACCCTTGGTTTAGAAGACCAGTTAGACT
GCCAGCGGCCGTCTTCACCTGGTGTTTTGTATGGTCTTCTTGAAGACTTACTTCCAGGTC
CAGTCACAATAGTTACAGAAAGAAGTCCTTCGTTAAACAACACACTTAATCCTAAAACGT
CTCTCGTTGGTATCAGAGTACCCGACCATAAATTCATTAAAGATCTAACTAATCGTCTGC
GTGAGCCTTTGGCCCTTACATCTGCAAACGTCAGTGGAGAAGAGTCTTCCCTAAGAATTG
AAGACTTCAGAAGTTTGTGGCCCAAACTTGATGCAGTGGTAGATGACGGCGAAGTAGGAA
CAAGATATGTTAACAAGACATTACAATACGCCAAAGAGGGATCCACAGTTGTACAGATCT
TGAATGATGGTGTCTCATTTAAAATCTTGCGTCCAGGGTGTGCGTATGAAAATACTGTTT
CTGTTTTAAAGTGTAAATATGGTCTTAAACTCACAATGTAGTTTTGGAACTGGAACTGTT
TCTGAACCAGTCTTAACTGCTTAGTTTTTCTAGTAACTATGTTTTTCTTGTTTAAACATC
TCTAAAACTCTGTTGACAGCAACTGTAAATTTAATACAGCTTTAAGTTTATATCAACTAA
GTTTGTACGGCTGTATATATTAAAACATATCTACAGTTATTAAAGCACAAACTCACAGCA
AAAGCAAACCATTGGTGTGCTTGCCTGCTTAAACTACATTACCATAGTATTTTGCTTTTC
CTAAGCGGCTGATGCCTAGTAGCACTAAGTCTTATGCTGCACATTCTGTTTCCAATTACA
TTTAGAATCCCATGACACAGTATTGAGTTACAGAAAAAATGCTATCTATTCAATTATTTT
GTTTTCAACTCTTTGCATTTATGATTTTACCAATTTACAATCACATTCAAAACTATCTTT
TGTGTTTTCTACCTTACACCAATACACACACGTATTATGTCACACCATTCCATGCCTCGA
AAATAAAATTCCTGCCTTGCCTAAAA

InterProScan

SUPERFAMILY	DHBP_synth_RibB-like_a/b_dom (IPR017945) - T[95-330] 2.78E-40
ProSiteProfiles	YrdC-like_dom (IPR006070) - T[105-326] 22.79
Pfam	YrdC-like_dom (IPR006070) - T[114-324] 1.0E-39

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
YRDC_HUMAN	43.277 %	180	1.33E-54