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TRANSCRIPT CARD

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  1. Clone 'csef005i22' > 
  2. Clone 'AHC0AAA179YB14' > 
  3. Transcript 'KH2012:KH.C1.99.v1.A...'

Transcript Model

Transcript Id

KH2012:KH.C1.99.v1.A.SL1-1

Possible name(s)

SOX14; SOX2; SOX21

Gene model

KH2012:KH.C1.99

Location

KhC1 [1,491,497 / 1,495,325]

Sequences

Amino acid sequence

Length: 455

>KH.C1.99.v1.A.SL1-1
FNSCEHSPKVSHVIKLDFVAYKNFSVPTPPGFLKEPSQNDFMLTVDHNPNWMQIPYPTSG
VPVIPSNAHLPPPAPIAGSTPTSGSQGDVKPYIGENGHLGGSMTHLSPPMMNHVQGSHNQ
NNNNSSANNKVPQEQRVKRPMNAFMVWSRGQRRKMAQDNPKMHNSEISKRLGAEWKTLSD
SDKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKAILKKENKFGMGPGGIMGGGAGPQMSA
SGQRSHMSAAPIDYSQYYQHSMMAGSQDPMAYGAPSPHAYPAMANSGTAANRYEMYYPSY
STPTTLPSMSSLTSQHNSYAQSAYSVGGSPAYSVAQAHTPTNSLHSMAGSHHGSSGVHSP
ANTSPGASSVTSAAASSGGSPLHQQLQSMLPLHSHQLPISQMYLPISEQQPASATTPTDP
SHSPGLSRLNSIGPGTHYPISTSMGQLPMHMPAHM

Nucleotide sequence

Length: 2,564

>KH2012:KH.C1.99.v1.A.SL1-1
CGTTTGGAATCAAGTAAAGATATTTAATTCAATTCTTGCGAACATTCGCCTAAAGTCTCA
CACGTCATTAAACTGGATTTTGTAGCTTACAAAAACTTCTCCGTCCCTACTCCACCGGGG
TTCCTGAAAGAGCCATCTCAGAACGACTTCATGTTAACCGTTGACCACAACCCAAACTGG
ATGCAGATCCCATACCCGACCTCAGGGGTTCCTGTGATACCAAGCAATGCACATTTGCCT
CCTCCAGCCCCAATTGCCGGATCGACGCCGACCTCTGGCTCGCAAGGCGACGTGAAACCA
TACATCGGGGAAAACGGTCATCTCGGCGGGAGCATGACGCACTTAAGCCCGCCGATGATG
AACCACGTTCAGGGAAGCCACAACCAGAACAACAACAATTCGTCCGCCAACAACAAAGTA
CCACAAGAGCAGAGAGTGAAACGACCAATGAATGCATTTATGGTGTGGTCTCGCGGGCAA
CGCAGAAAGATGGCACAGGACAACCCAAAGATGCACAACTCTGAGATTTCCAAACGACTT
GGCGCGGAATGGAAAACCCTTTCAGACTCCGACAAGCGACCTTTTATCGACGAAGCGAAA
CGGCTGCGCGCTCTACATATGAAGGAACATCCAGACTACAAGTACCGACCACGCCGCAAA
ACGAAGGCGATCCTTAAGAAAGAGAACAAGTTTGGAATGGGCCCAGGTGGTATTATGGGC
GGAGGCGCGGGACCACAAATGTCGGCTTCCGGTCAACGATCTCACATGTCCGCGGCACCG
ATAGATTACTCGCAATATTACCAGCACTCTATGATGGCGGGCTCGCAAGACCCAATGGCA
TACGGGGCGCCTTCTCCACACGCTTACCCGGCTATGGCAAACAGTGGAACTGCTGCGAAC
CGATACGAAATGTATTATCCAAGCTACAGTACTCCCACCACTTTACCCAGCATGAGTTCT
CTAACCAGCCAACACAACAGCTACGCACAATCAGCATACAGCGTGGGTGGGTCGCCTGCA
TACAGCGTAGCACAAGCCCATACACCTACAAACTCTCTACACAGCATGGCGGGATCCCAT
CACGGTAGCAGCGGCGTCCATTCACCAGCTAACACCAGTCCAGGTGCTTCGTCTGTGACG
TCAGCGGCTGCGTCATCAGGGGGAAGTCCCCTACACCAGCAACTACAGTCGATGCTACCA
TTACATTCACACCAACTGCCGATAAGTCAGATGTATTTGCCCATAAGCGAGCAGCAACCA
GCCTCCGCAACCACACCGACCGATCCATCACATAGCCCTGGACTCTCCCGGCTTAATTCA
ATCGGTCCAGGCACCCACTACCCCATCTCTACATCTATGGGCCAGCTGCCTATGCACATG
CCTGCGCATATGTAGGAGTTCGTCACCCAGTCTATAACACGAAGTTCAAAACATACACCT
CGCGTGTAGAAGCCGCGCCAGCCGAGCACGAGTTGGAAAAGAAGCCTAGGATCTGAAACT
AAAACCACAGAACGACCTATCACCATTGAAGTTGCGTATATTGTCTTTTGTTTTAATTTT
CCGTCTAATTTAAGCTTTTAAACTGTGACATTGTACATAAGCTATACACATGTAGCTTTA
TAAGTTAACAGTCCAGCGGTGCTGGATTTATTTCGGGACTTTGCCCAGAAACGCAACTGC
ACCGTTTTAACTATCGCCGCGTTTTCTGCTGTACAGTTTTTAATTCGCCGTTTGTGCCTT
TTAATATAACACAGTTTGCAACCCAGCCCCGTATCTTCAGTAAGCATCCAATCTTCAATT
TGATTTCACTCACAATCTACTAAAACCACTGACTTTTATTTATTTCCATCTTGTGATTCT
GCATATGAATGACGTATGTCAACGTGGCAGCACCAATATATTGCAGACTTAAATCAACTG
TATATACACGTTACCTATTTGGAAGTTTTGTCCATTTCCAACATGATAATATTGCTAATT
TTTGGCAAGACACAAACCCATTATAACTCGTTACGAAACTTTTGCGTTATATGATAGATG
TTAGTCTTTTCCCTTTAGAATCGAAGTCAATTTTGTGTCTGAATGTTCTACAGTTATGTT
ATTATAGTTTTTTTCAAGGTAGATTTTACACCACCGCTTTTGTTTCAACTTTCTACAGCA
ACCTACTTCTGGGGTTGTCCACTTTACGAGCCAGTAGTGTAGCAAACCCACAGCGCTGTG
CCACCACATCAAACTTTTGTAAATCCTTCGAATGTTTTTGCTTCAAATAATTTGTAAATT
TATGATTCCGGTTCCCCATGCGAACGCTACAACCCACACATGCTGCAGCCTCAAAAAGGC
TGTAGTATTGTCGATAGCTCAATCGTAACCACTGTCACTGTACAACGTAGCCTAAAACGT
ACTGAAATCCGCTCTCGAAAGAATATATACCGCGCTGGTTGTGAAACTAACAACTGTACA
TTACCACTAACCCACTTGAGAGCATTCAATTTTTCTTCTTGCGTTTTGCTGTTGAACGGC
CCTGTCTAGTAAAATGTAGTGACCAATAAAATAATTGAAACCAA

InterProScan

SUPERFAMILY
HMG_box_dom_sf (IPR036910) - T[128-209] 5.11E-28
Gene3D
HMG_box_dom_sf (IPR036910) - T[134-212] 1.3E-31
SMART
HMG_box_dom (IPR009071) - T[136-206] 2.0E-28
Pfam
HMG_box_dom (IPR009071) - T[137-205] 5.5E-27
ProSiteProfiles
HMG_box_dom (IPR009071) - T[137-205] 22.928

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SOX2_HUMAN 80.808 % 174 8.99E-51
SOX21_HUMAN 79.381 % 162 6.18E-47
SOX14_HUMAN 84.524 % 160 1.49E-46