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- Transcript 'KH2012:KH.C1.994.v1....'
Transcript Model
Transcript Id
KH2012:KH.C1.994.v1.A.SL1-1
Possible name(s)
RBMXL3; SNRNP35; SNRNP70
Gene model
Location
KhC1 [4,032,950 / 4,037,896]
Amino acid sequence
Length: 474
>KH.C1.994.v1.A.SL1-1
EPLDSFTSIYLTKMTQFLPPNLLALFAPRDAIPYKAPLQPLTWEKDRERAPYTGLGNFSH
LFEDPKDTPPPTRGETKEEKKTRKIKEKLEKRAEEIEEEIKGWDPHNDPNAGGDAFKTLF
VSRINYDTTESKLRREFETYGKIRKVTIVKDVATGKPRGYAFVEFDRERDMHTAYKSADG
KKIDGRRVLVDVERGRTVKGWRPRRFGGGLGSTRAGPDDSNRRSEREKERDSGRSHDDDK
VRKSEDRPRERDREREKRRKSGDRERSDRDKDRNRDRDRDRDREKRRRDDRGDKDRRDRD
RKRESDHKSSRSKNDERASGAVDGGDGENGKKEERSRDKDRESRHRHRDRDRSDKDKERR
HRDRDRGKDRDSRSDVKEDKRDDKSMTTIKDEYGSNPGMKQEYDQTIKQEYQQNYEEPGR
RYGGEGDAYNNMAQDNSSNNGYYPEKDRMEYQQANPENKQYDRQGNYDYNPEEY
Nucleotide sequence
Length: 1,663
>KH2012:KH.C1.994.v1.A.SL1-1
TGAACCTTTAGATTCGTTTACCTCTATATATTTGACCAAAATGACTCAGTTTCTGCCACC
TAATTTACTTGCATTGTTCGCACCTCGAGATGCAATTCCATATAAAGCGCCATTGCAACC
GTTAACATGGGAGAAAGATCGTGAGCGAGCACCTTATACTGGTTTGGGAAATTTCTCCCA
TTTATTCGAAGATCCAAAAGACACTCCACCACCAACCAGGGGAGAAACAAAAGAAGAAAA
GAAAACACGAAAAATAAAGGAGAAGTTGGAAAAGCGAGCTGAGGAGATAGAAGAAGAAAT
AAAGGGTTGGGATCCGCACAATGATCCGAATGCTGGTGGAGATGCATTCAAAACTTTATT
TGTATCAAGAATTAATTACGACACAACAGAAAGCAAACTACGAAGGGAATTCGAAACATA
TGGAAAGATACGAAAGGTAACGATAGTAAAGGATGTTGCAACTGGGAAACCACGTGGTTA
TGCGTTCGTTGAGTTTGATCGGGAAAGAGACATGCACACTGCTTATAAAAGTGCGGATGG
AAAAAAAATTGACGGCCGTCGAGTTCTTGTTGATGTTGAGCGTGGACGAACAGTTAAAGG
TTGGAGACCTCGAAGGTTTGGTGGAGGATTAGGATCGACGCGTGCAGGTCCTGATGACTC
TAATCGTCGATCAGAAAGAGAAAAGGAGCGTGATAGTGGAAGAAGTCATGATGATGATAA
AGTACGAAAATCTGAAGATCGACCTCGTGAAAGGGATAGGGAAAGAGAAAAACGAAGAAA
ATCAGGCGATCGGGAAAGGTCGGATAGGGATAAAGATCGAAACAGAGATCGGGATCGAGA
TCGTGATCGTGAAAAGCGCAGGCGTGATGATCGTGGTGATAAAGATCGTCGCGACCGTGA
TAGAAAGCGGGAATCTGATCATAAATCTTCACGAAGCAAGAATGATGAAAGGGCAAGTGG
TGCAGTAGATGGTGGAGATGGAGAAAATGGAAAAAAAGAAGAGAGAAGTCGTGACAAAGA
TCGGGAGTCCAGGCATCGTCACAGGGATCGAGATAGGTCCGATAAAGATAAAGAAAGGCG
TCATCGAGATCGAGACCGCGGAAAAGACAGAGATAGTCGTTCAGATGTAAAAGAAGACAA
ACGAGATGATAAGTCAATGACTACAATTAAAGATGAATATGGTAGTAATCCTGGAATGAA
ACAAGAATATGACCAGACAATAAAGCAAGAATATCAACAGAATTATGAAGAGCCAGGTAG
ACGTTATGGTGGCGAAGGTGATGCTTACAATAACATGGCTCAAGACAATTCCTCCAACAA
TGGTTACTACCCAGAAAAAGATCGTATGGAATACCAACAAGCTAATCCTGAGAACAAACA
ATATGACCGACAGGGTAATTACGACTACAACCCAGAAGAATACTAAACAAGTGAAACTGC
TTATACTTGAGGTGAACTTTGTACTCTATCACTGCTTCCATGATGTCCATAACATCAAAA
GATGGCTTCAGCGTCAATGAAACTAAAATGCTCACCCATTCTTATATTTTACGGTGTTGG
TTCAATTCACATTTTTAGTTTGAATTGGGGAGTTTTAACTGCTTAATATTGGATCGCAAA
TGATGATATTTTAATGTACAATAAACAAAGCTGTTGGAAGCAA
| Pfam |
U1snRNP70_N (IPR022023) - T[16-108] 3.9E-23 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[104-232] 1.0E-35 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[106-223] 3.22E-30 |
| CDD |
snRNP70_RRM (IPR034143) - T[116-206] 1.05052E-54 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[117-195] 19.365 |
| SMART |
RRM_dom (IPR000504) - T[118-191] 2.6E-24 |
| Pfam |
RRM_dom (IPR000504) - T[119-188] 7.1E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RU17_HUMAN | 69.149 % | 253 | 2.74E-79 |
| U1SBP_HUMAN | 37.383 % | 99 | 1.59E-23 |