Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.1000.v1.A.nonSL3-1

Possible name(s)

POLR2H

Gene model

KH2012:KH.C2.1000

Location

KhC2 [4,779,959 / 4,782,177]

Sequences

Amino acid sequence

Length: 153

>KH.C2.1000.v1.A.nonSL3-1
NMATGLLFEDIFDIKDVDPEGKKFDRVSRLHCDSESFKMELILDINTQLYPVELGDKFRL
VLATTLSEDGTPADGEFNPLWEKNPTRADQFEYVMYGKVYRIEGEESVGDVASKLSAYVS
FGGLLMRLQGDANNLHGMTVDQNLYLLLKKLAF

Nucleotide sequence

Length: 1,544

>KH2012:KH.C2.1000.v1.A.nonSL3-1
AAAACATAGAAATACACGCACATACGGTTATGCGTATGTGATTGAAAGTTTTTCTAGCTT
ATTAATAAACACGTTAAAGGTAGAATATGGCAACAGGACTACTTTTTGAAGATATATTCG
ACATTAAGGATGTAGATCCAGAGGGTAAGAAGTTCGACCGTGTTTCACGTTTACATTGTG
ATAGCGAGTCGTTCAAAATGGAACTCATTCTCGACATCAACACACAGCTGTACCCAGTTG
AGCTAGGTGACAAGTTCCGGCTTGTACTGGCAACTACACTCAGTGAAGATGGCACTCCTG
CTGATGGAGAGTTCAATCCTCTTTGGGAGAAAAATCCAACCAGGGCCGACCAGTTCGAAT
ACGTCATGTATGGAAAGGTTTATCGAATAGAGGGTGAAGAAAGTGTTGGAGATGTTGCTT
CCAAATTATCCGCCTACGTTTCATTTGGCGGTTTACTGATGCGGCTTCAGGGAGATGCAA
ACAATTTGCATGGTATGACAGTTGACCAAAACTTATATTTGTTGCTAAAGAAACTTGCAT
TTTGATGAATATTTGTGATACTGATATGCTCATGCTGTTATCACAAAGTGTTGGAAGGGG
CTCTGAAGAGATTGCTCAAAAGCAGTTGTGTGAACATTAGTTATGATTCCTGATGATAAT
CAAGCTGCCACATTGTTTTTGATAACAGTCATTGTTCATTTTACGCCTTTTATTACATGT
GCACCTTTAATTGCATTAAAGCAATCAAATTATAAAATTTACATCTTTATTTTAAACTGA
AGAAGTACGTGAAAAAGTGATATCATTATTTTTTTATTTGCGGGCTTCTAATGTAATGTT
AAGTGGGGTAGACGAGCGAAGAATAAGGTCTCCATTTATCACAAGATCTTCTTTCTTGTC
ATGTGAAACAACGAAGTAATTATGCAAAAGCTTGGACAAGATAACTTTTTCTTCCATGAG
AGCAAATTTCTGACCGATGCAGTTACGTGGGCCGGCTGAAAACGGAATGTAAGCGTAGGG
ATGGCGCTTAACACAATTTTCTGCTAGGAAACGATCGGGATCAAATTTTTCTGGATCTTC
CCACACATAAGGATGGTGGTGGATTGTGTGGGCAAAGATCACAGTCTGTGTTCCTTTCGG
TACCATGTAATCTCCGACCTTGCAATCCTCACTCAAGACTCGCGCATAGAACGGCACAGA
CGGGTATAACCGTAGACATTCTTTAATCACTCTTTCCAAGTAAGAAAGCTTCTGAAGTTG
GTTGTTAGTGATTGTGCCTCCTCTATCCTCTCCGAAAACAGCATCTAGTTCCTCGTGGAT
CTTTTTTTGTATATCAGGATGTCGGCCTATGACGTAGATCGCCCACGTCATGGCAGCCGC
TGTTGTATCGTGTCCTTCAAACATGAACGTATCCACTTCCTCTTGAATGTCGTTAAGTGA
GAGCGTTTTGCCGTCTTCTGTTTCAGCGTGCAGGAGTACGTCAAGAAACGCCATTCGTCT
CGGGTTCTACAAGTATTTGAATCTTAAAACAAAATAAAACAATT

InterProScan

PANTHER	RNA_pol_Rpb8 (IPR005570) - T[2-150] 3.0E-60
PIRSF	RNA_pol_Rpb8 (IPR005570) - T[2-152] 3.1E-57
SMART	RNA_pol_Rpb8 (IPR005570) - T[4-150] 3.5E-83
SUPERFAMILY	NA-bd_OB-fold (IPR012340) - T[5-150] 1.7E-46
Pfam	RNA_pol_Rpb8 (IPR005570) - T[9-150] 2.8E-56

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RPAB3_HUMAN	75.333 %	242	1.27E-83