- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.A.ND8-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,487]
Amino acid sequence
Length: 516
>KH.C2.161.v1.A.ND8-1
MSPSLYTRDNIGHSNISPPPFFHRRSPVVSPDTFPRGSPISYCTHSAPGSPYNGQRLQPS
PPQCTHPVKERFQPEQRRVSLPNALFQNGHSLNRNGSNGHDLELISDASNSSYDHVFSRS
SSKNDVEPVNERRSSEGQVVCNGAGTQQLQKKGELHSKAPSLNGKSEQNRKRSASDVCQV
CGDRASGYHYNALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCR
AVGMLEECLLTEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLL
IELVGKSFSDYRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLD
SHDQIALLKGCVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKL
QMDETEYGLLIAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILS
LLTEMRTLYHTHAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,765
>KH2012:KH.C2.161.v1.A.ND8-1
ATGTCGCCGTCGCTGTACACTCGTGATAACATTGGCCATTCCAACATTTCACCGCCCCCG
TTTTTCCATCGAAGATCGCCGGTGGTTTCGCCAGATACATTCCCGAGAGGAAGTCCCATA
AGTTACTGCACCCATAGTGCCCCTGGAAGTCCATACAACGGCCAGCGCCTACAGCCGTCG
CCCCCGCAGTGCACACATCCAGTGAAAGAACGATTTCAGCCGGAACAGCGAAGAGTTTCC
CTTCCAAACGCTTTGTTCCAAAATGGTCATTCGTTAAACCGAAACGGCTCAAACGGTCAT
GACCTTGAGTTGATTTCCGACGCAAGTAACTCGTCATACGATCACGTCTTTTCACGATCC
TCATCTAAAAATGATGTTGAACCGGTCAATGAAAGAAGAAGCAGCGAAGGTCAAGTTGTG
TGTAATGGTGCTGGCACGCAACAGCTGCAAAAGAAAGGGGAACTGCATTCGAAGGCTCCG
TCACTAAATGGAAAATCCGAACAAAATCGCAAAAGAAGTGCTAGTGATGTATGCCAAGTG
TGTGGTGACCGTGCGTCTGGATATCATTATAATGCTCTCACATGCGAAGGCTGCAAAGGA
TTTTTCCGACGCTCAATTAACAGAAAGGAGTCTCATTACAGATGCAAATACGGTGGAAAG
TGTGAAATGGACATGTACACACGCCGAAAATGTCCTGAATGTCGATTAAGAAAATGCAGG
GCTGTTGGGATGTTAGAAGAATGTTTGTTGACTGAAATCCAATGCAAATCAAAAAGAAGA
AGTAGGAAAGTGAAAACAATTCAAGAAGATGATGAAACAAAAGAAAGTGTACCGAATCCG
ATCCCACCACCCAAACCCGCAGTTAAATCTCCACCAGAACCAGATGAAACTGATTTATTA
ATTGAATTGGTTGGAAAAAGTTTCTCAGATTACCGGAATAATCCTGAGATAGTAAATCGT
TGGGAATGTTTTTACGAATTGTCAACGAAAACGCCTCCGAATCTTTGTGAAATCGCTACC
ATTCACGTACAAGTGTTAGTAGAGTTCACCAAGAAGTTACCAGGTTTCATGCGACTTGAC
TCACACGACCAGATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCAATGCTTCTACGAAAC
TCCTGTGGTTACAACAAGGTTAACAGATTCCTGGATCTAAAACGTGTTGTACGAGACACA
GGTATAAAGGAAGACCATATTCGAACGCTCACTGATTTTTTTGACAATGTTGCAAAACTT
CAAATGGATGAAACCGAATACGGCTTGCTTATTGCCATCATTGTGTTTGACTCCGATCAC
ACCGACCTTGAGAACAGACTTACCATTGACAAATATAGGGACCGGTACCTGTCCGCTCTC
TCGCGTTACAGCGAGGCCCGTGAGCCGCGACGTCCTCAGATCTTCGCAAAAATCCTCTCT
CTTCTTACAGAAATGCGAACACTGTATCACACCCACGCTAAAATGGTCTTGGATTGGAAA
CAAAGGGAACAGCTGACACCTTTGCTTTGTGAGATTTGGGATATGCGGTGATCGGTTTCA
GTCAATGCCCAGGAAAGGGCATCTTATTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGT
AGATTAAGTATACACAATTGGCCCCATCCGAGCTTGCACCTGACTATTGCTATATATGCT
GATGTTTGGAATTTCCATGGTATAGTTCATCGTTGATTTTCTTTTACTGGTATACGCACA
ATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[175-276] 3.2E-29 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[175-247] 2.5E-32 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[175-251] 18.335 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[177-244] 5.3E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[178-194] 7.2E-17 - T[194-209] 7.2E-17 - T[228-236] 7.2E-17 - T[236-244] 7.2E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[178-204] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[240-250] 2.6E-19 - T[338-359] 2.6E-19 - T[359-375] 2.6E-19 - T[420-435] 2.6E-19 - T[477-494] 2.6E-19 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[242-258] 3.9E-6 - T[335-356] 3.9E-6 - T[361-380] 3.9E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[329-514] 7.47E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[332-493] 3.5E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[337-489] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 37.33 % | 234 | 1.23E-71 |
| NR1H4_HUMAN | 45.506 % | 295 | 1.68E-94 |
| THB_HUMAN | 33.243 % | 159 | 3.61E-43 |