- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.A.nonSL11-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,097]
Amino acid sequence
Length: 386
>KH.C2.161.v1.A.nonSL11-1
ERRSSEGQVVCNGAGTQQLQKKGELHSKAPSLNGKSEQNRKRSASDVCQVCGDRASGYHY
NALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLL
TEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSD
YRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKG
CVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLL
IAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYH
THAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,375
>KH2012:KH.C2.161.v1.A.nonSL11-1
GAAAGAAGAAGCAGCGAAGGTCAAGTTGTGTGTAATGGTGCTGGCACGCAACAGCTGCAA
AAGAAAGGGGAACTGCATTCGAAGGCTCCGTCACTAAATGGAAAATCCGAACAAAATCGC
AAAAGAAGTGCTAGTGATGTATGCCAAGTGTGTGGTGACCGTGCGTCTGGATATCATTAT
AATGCTCTCACATGCGAAGGCTGCAAAGGATTTTTCCGACGCTCAATTAACAGAAAGGAG
TCTCATTACAGATGCAAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCCGAAAA
TGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTTTGTTG
ACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAGAAGAT
GATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTAAATCT
CCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCTCAGAT
TACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAACGAAA
ACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGTTCACC
AAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGAAAGGT
TGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACAGATTC
CTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAACGCTC
ACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCTTGCTT
ATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCATTGAC
AAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGCCGCGA
CGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGTATCAC
ACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGCTTTGT
GAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTTATTTT
AACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCCATCCG
AGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAGTTCAT
CGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[45-117] 2.5E-32 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[45-146] 2.0E-29 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[45-121] 18.335 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[47-115] 3.4E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[48-64] 2.7E-17 - T[64-79] 2.7E-17 - T[98-106] 2.7E-17 - T[106-114] 2.7E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[48-74] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[110-120] 7.3E-20 - T[208-229] 7.3E-20 - T[229-245] 7.3E-20 - T[290-305] 7.3E-20 - T[347-364] 7.3E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[112-128] 1.9E-6 - T[205-226] 1.9E-6 - T[231-250] 1.9E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[199-384] 3.41E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[202-363] 1.9E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[207-359] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.785 % | 235 | 1.88E-73 |
| NR1H4_HUMAN | 45.506 % | 292 | 3.01E-95 |
| NR1I3_HUMAN | 30.362 % | 158 | 3.98E-45 |