- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.A.nonSL13-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,101]
Amino acid sequence
Length: 387
>KH.C2.161.v1.A.nonSL13-1
NERRSSEGQVVCNGAGTQQLQKKGELHSKAPSLNGKSEQNRKRSASDVCQVCGDRASGYH
YNALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECL
LTEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFS
DYRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLK
GCVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGL
LIAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLY
HTHAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,379
>KH2012:KH.C2.161.v1.A.nonSL13-1
CAATGAAAGAAGAAGCAGCGAAGGTCAAGTTGTGTGTAATGGTGCTGGCACGCAACAGCT
GCAAAAGAAAGGGGAACTGCATTCGAAGGCTCCGTCACTAAATGGAAAATCCGAACAAAA
TCGCAAAAGAAGTGCTAGTGATGTATGCCAAGTGTGTGGTGACCGTGCGTCTGGATATCA
TTATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTTCCGACGCTCAATTAACAGAAA
GGAGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCCG
AAAATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTTT
GTTGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAGA
AGATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTAA
ATCTCCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCTC
AGATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAAC
GAAAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGTT
CACCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGAA
AGGTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACAG
ATTCCTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAAC
GCTCACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCTT
GCTTATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCAT
TGACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGCC
GCGACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGTA
TCACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGCT
TTGTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTTA
TTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCCA
TCCGAGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAGT
TCATCGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[46-122] 18.335 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[46-118] 2.5E-32 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[46-147] 2.0E-29 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[48-116] 3.4E-27 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[49-75] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[49-65] 2.7E-17 - T[65-80] 2.7E-17 - T[99-107] 2.7E-17 - T[107-115] 2.7E-17 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[111-121] 7.4E-20 - T[209-230] 7.4E-20 - T[230-246] 7.4E-20 - T[291-306] 7.4E-20 - T[348-365] 7.4E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[113-129] 1.9E-6 - T[206-227] 1.9E-6 - T[232-251] 1.9E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[200-385] 3.41E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[203-364] 1.9E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[208-360] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.785 % | 235 | 2.25E-73 |
| NR1H4_HUMAN | 45.506 % | 292 | 3.82E-95 |
| NR1I3_HUMAN | 30.362 % | 158 | 3.95E-45 |