- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.A.nonSL15-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,115]
Amino acid sequence
Length: 392
>KH.C2.161.v1.A.nonSL15-1
DVEPVNERRSSEGQVVCNGAGTQQLQKKGELHSKAPSLNGKSEQNRKRSASDVCQVCGDR
ASGYHYNALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCRAVGM
LEECLLTEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELV
GKSFSDYRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQ
IALLKGCVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDE
TEYGLLIAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTE
MRTLYHTHAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,393
>KH2012:KH.C2.161.v1.A.nonSL15-1
GATGTTGAACCGGTCAATGAAAGAAGAAGCAGCGAAGGTCAAGTTGTGTGTAATGGTGCT
GGCACGCAACAGCTGCAAAAGAAAGGGGAACTGCATTCGAAGGCTCCGTCACTAAATGGA
AAATCCGAACAAAATCGCAAAAGAAGTGCTAGTGATGTATGCCAAGTGTGTGGTGACCGT
GCGTCTGGATATCATTATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTTCCGACGC
TCAATTAACAGAAAGGAGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGAAATGGAC
ATGTACACACGCCGAAAATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATG
TTAGAAGAATGTTTGTTGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTG
AAAACAATTCAAGAAGATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCC
AAACCCGCAGTTAAATCTCCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTT
GGAAAAAGTTTCTCAGATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTT
TACGAATTGTCAACGAAAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAA
GTGTTAGTAGAGTTCACCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAG
ATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTAC
AACAAGGTTAACAGATTCCTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAA
GACCATATTCGAACGCTCACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAA
ACCGAATACGGCTTGCTTATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAG
AACAGACTTACCATTGACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGC
GAGGCCCGTGAGCCGCGACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAA
ATGCGAACACTGTATCACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAG
CTGACACCTTTGCTTTGTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAG
GAAAGGGCATCTTATTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATA
CACAATTGGCCCCATCCGAGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAAT
TTCCATGGTATAGTTCATCGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATA
TGGCTTTACTAAA
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[51-123] 2.5E-32 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[51-127] 18.335 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[51-152] 2.0E-29 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[53-121] 3.5E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[54-70] 2.8E-17 - T[70-85] 2.8E-17 - T[104-112] 2.8E-17 - T[112-120] 2.8E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[54-80] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[116-126] 7.8E-20 - T[214-235] 7.8E-20 - T[235-251] 7.8E-20 - T[296-311] 7.8E-20 - T[353-370] 7.8E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[118-134] 1.9E-6 - T[211-232] 1.9E-6 - T[237-256] 1.9E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[205-390] 3.54E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[208-369] 1.9E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[213-365] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.785 % | 235 | 2.46E-73 |
| NR1H4_HUMAN | 45.506 % | 293 | 2.75E-95 |
| NR1I3_HUMAN | 30.362 % | 158 | 5.73E-45 |