- Transcript 'KH2012:KH.C9.247.v1....' >
- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.A.nonSL2-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,219]
Amino acid sequence
Length: 426
>KH.C2.161.v1.A.nonSL2-1
SLNRNGSNGHDLELISDASNSSYDHVFSRSSSKNDVEPVNERRSSEGQVVCNGAGTQQLQ
KKGELHSKAPSLNGKSEQNRKRSASDVCQVCGDRASGYHYNALTCEGCKGFFRRSINRKE
SHYRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTIQED
DETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVNRWECFYELSTK
TPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNKVNRF
LDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDLENRLTID
KYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDWKQREQLTPLLC
EIWDMR
Nucleotide sequence
Length: 1,497
>KH2012:KH.C2.161.v1.A.nonSL2-1
ATTCGTTAAACCGAAACGGCTCAAACGGTCATGACCTTGAGTTGATTTCCGACGCAAGTA
ACTCGTCATACGATCACGTCTTTTCACGATCCTCATCTAAAAATGATGTTGAACCGGTCA
ATGAAAGAAGAAGCAGCGAAGGTCAAGTTGTGTGTAATGGTGCTGGCACGCAACAGCTGC
AAAAGAAAGGGGAACTGCATTCGAAGGCTCCGTCACTAAATGGAAAATCCGAACAAAATC
GCAAAAGAAGTGCTAGTGATGTATGCCAAGTGTGTGGTGACCGTGCGTCTGGATATCATT
ATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTTCCGACGCTCAATTAACAGAAAGG
AGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCCGAA
AATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTTTGT
TGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAGAAG
ATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTAAAT
CTCCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCTCAG
ATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAACGA
AAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGTTCA
CCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGAAAG
GTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACAGAT
TCCTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAACGC
TCACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCTTGC
TTATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCATTG
ACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGCCGC
GACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGTATC
ACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGCTTT
GTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTTATT
TTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCCATC
CGAGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAGTTC
ATCGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[85-186] 2.4E-29 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[85-161] 18.335 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[85-157] 2.5E-32 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[87-154] 4.0E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[88-104] 3.7E-17 - T[104-119] 3.7E-17 - T[138-146] 3.7E-17 - T[146-154] 3.7E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[88-114] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[150-160] 1.1E-19 - T[248-269] 1.1E-19 - T[269-285] 1.1E-19 - T[330-345] 1.1E-19 - T[387-404] 1.1E-19 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[152-168] 2.4E-6 - T[245-266] 2.4E-6 - T[271-290] 2.4E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[239-424] 4.46E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[242-403] 2.4E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[247-399] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.785 % | 235 | 4.39E-73 |
| NR1H4_HUMAN | 45.506 % | 293 | 6.71E-95 |
| NR1I3_HUMAN | 30.362 % | 158 | 1.25E-44 |