- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.A.nonSL4-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,002]
Amino acid sequence
Length: 354
>KH.C2.161.v1.A.nonSL4-1
NGKSEQNRKRSASDVCQVCGDRASGYHYNALTCEGCKGFFRRSINRKESHYRCKYGGKCE
MDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTIQEDDETKESVPNPIP
PPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVNRWECFYELSTKTPPNLCEIATIH
VQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGI
KEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDLENRLTIDKYRDRYLSALSR
YSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,280
>KH2012:KH.C2.161.v1.A.nonSL4-1
AAATGGAAAATCCGAACAAAATCGCAAAAGAAGTGCTAGTGATGTATGCCAAGTGTGTGG
TGACCGTGCGTCTGGATATCATTATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTT
CCGACGCTCAATTAACAGAAAGGAGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGA
AATGGACATGTACACACGCCGAAAATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGT
TGGGATGTTAGAAGAATGTTTGTTGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAG
GAAAGTGAAAACAATTCAAGAAGATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCC
ACCACCCAAACCCGCAGTTAAATCTCCACCAGAACCAGATGAAACTGATTTATTAATTGA
ATTGGTTGGAAAAAGTTTCTCAGATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGA
ATGTTTTTACGAATTGTCAACGAAAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCA
CGTACAAGTGTTAGTAGAGTTCACCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACA
CGACCAGATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTG
TGGTTACAACAAGGTTAACAGATTCCTGGATCTAAAACGTGTTGTACGAGACACAGGTAT
AAAGGAAGACCATATTCGAACGCTCACTGATTTTTTTGACAATGTTGCAAAACTTCAAAT
GGATGAAACCGAATACGGCTTGCTTATTGCCATCATTGTGTTTGACTCCGATCACACCGA
CCTTGAGAACAGACTTACCATTGACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCG
TTACAGCGAGGCCCGTGAGCCGCGACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCT
TACAGAAATGCGAACACTGTATCACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAG
GGAACAGCTGACACCTTTGCTTTGTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAA
TGCCCAGGAAAGGGCATCTTATTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATT
AAGTATACACAATTGGCCCCATCCGAGCTTGCACCTGACTATTGCTATATATGCTGATGT
TTGGAATTTCCATGGTATAGTTCATCGTTGATTTTCTTTTACTGGTATACGCACAATAAA
GTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[13-114] 1.7E-29 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[13-85] 2.5E-32 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[13-89] 18.335 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[15-83] 3.0E-27 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[16-32] 2.0E-17 - T[32-47] 2.0E-17 - T[66-74] 2.0E-17 - T[74-82] 2.0E-17 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[16-42] . |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[78-88] 5.1E-20 - T[176-197] 5.1E-20 - T[197-213] 5.1E-20 - T[258-273] 5.1E-20 - T[315-332] 5.1E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[80-96] 1.5E-6 - T[173-194] 1.5E-6 - T[199-218] 1.5E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[167-352] 2.49E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[170-331] 1.5E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[175-327] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.785 % | 234 | 1.19E-73 |
| NR1H4_HUMAN | 45.506 % | 292 | 1.13E-95 |
| NR1I3_HUMAN | 30.362 % | 158 | 1.61E-45 |