- Clone 'citb033o05' >
- Transcript 'KH2012:KH.C2.161.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v1.R.nonSL1-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,040,022]
Amino acid sequence
Length: 361
>KH.C2.161.v1.R.nonSL1-1
HSKAPSLNGKSEQNRKRSASDVCQVCGDRASGYHYNALTCEGCKGFFRRSINRKESHYRC
KYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTIQEDDETKE
SVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVNRWECFYELSTKTPPNL
CEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNKVNRFLDLKR
VVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDLENRLTIDKYRDR
YLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDWKQREQLTPLLCEIWDM
R
Nucleotide sequence
Length: 1,300
>KH2012:KH.C2.161.v1.R.nonSL1-1
CATTCGAAGGCTCCGTCACTAAATGGAAAATCCGAACAAAATCGCAAAAGAAGTGCTAGT
GATGTATGCCAAGTGTGTGGTGACCGTGCGTCTGGATATCATTATAATGCTCTCACATGC
GAAGGCTGCAAAGGATTTTTCCGACGCTCAATTAACAGAAAGGAGTCTCATTACAGATGC
AAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCCGAAAATGTCCTGAATGTCGA
TTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTTTGTTGACTGAAATCCAATGC
AAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAGAAGATGATGAAACAAAAGAA
AGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTAAATCTCCACCAGAACCAGAT
GAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCTCAGATTACCGGAATAATCCT
GAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAACGAAAACGCCTCCGAATCTT
TGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGTTCACCAAGAAGTTACCAGGT
TTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCA
ATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACAGATTCCTGGATCTAAAACGT
GTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAACGCTCACTGATTTTTTTGAC
AATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCTTGCTTATTGCCATCATTGTG
TTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCATTGACAAATATAGGGACCGG
TACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGCCGCGACGTCCTCAGATCTTC
GCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGTATCACACCCACGCTAAAATG
GTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGCTTTGTGAGATTTGGGATATG
CGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTTATTTTAACAGTTCTTTTTCG
GTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCCATCCGAGCTTGCACCTGACT
ATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAGTTCATCGTTGATTTTCTTTT
ACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[20-121] 1.7E-29 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[20-96] 18.335 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[20-92] 2.5E-32 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[22-90] 3.1E-27 |
| ProSitePatterns |
Znf_hrmn_rcpt (IPR001628) - T[23-49] . |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[23-39] 2.1E-17 - T[39-54] 2.1E-17 - T[73-81] 2.1E-17 - T[81-89] 2.1E-17 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[85-95] 5.5E-20 - T[183-204] 5.5E-20 - T[204-220] 5.5E-20 - T[265-280] 5.5E-20 - T[322-339] 5.5E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[87-103] 1.6E-6 - T[180-201] 1.6E-6 - T[206-225] 1.6E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[174-359] 2.62E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[177-338] 1.6E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[182-334] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.785 % | 234 | 1.19E-73 |
| NR1H4_HUMAN | 45.506 % | 293 | 1.12E-95 |
| NR1I3_HUMAN | 30.362 % | 158 | 2.1E-45 |