- Transcript 'KH2012:KH.C2.161.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v2.A.nonSL6-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,039,825]
Amino acid sequence
Length: 326
>KH.C2.161.v2.A.nonSL6-1
NALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLL
TEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSD
YRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKG
CVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLL
IAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYH
THAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,197
>KH2012:KH.C2.161.v2.A.nonSL6-1
ATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTTCCGACGCTCAATTAACAGAAAGG
AGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCCGAA
AATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTTTGT
TGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAGAAG
ATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTAAAT
CTCCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCTCAG
ATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAACGA
AAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGTTCA
CCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGAAAG
GTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACAGAT
TCCTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAACGC
TCACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCTTGC
TTATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCATTG
ACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGCCGC
GACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGTATC
ACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGCTTT
GTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTTATT
TTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCCATC
CGAGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAGTTC
ATCGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-86] 1.3E-19 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-61] 14.287 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[1-57] 2.5E-12 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[2-55] 2.3E-17 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[4-19] 7.8E-9 - T[38-46] 7.8E-9 - T[46-54] 7.8E-9 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[50-60] 3.6E-20 - T[148-169] 3.6E-20 - T[169-185] 3.6E-20 - T[230-245] 3.6E-20 - T[287-304] 3.6E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[52-68] 1.2E-6 - T[145-166] 1.2E-6 - T[171-190] 1.2E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[139-324] 1.97E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[141-303] 1.2E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[147-299] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 35.735 % | 206 | 4.88E-63 |
| NR1H4_HUMAN | 44.248 % | 262 | 2.71E-84 |
| NR1I3_HUMAN | 28.902 % | 134 | 2.18E-36 |