- Transcript 'KH2012:KH.C2.161.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v2.A.nonSL7-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,039,828]
Amino acid sequence
Length: 327
>KH.C2.161.v2.A.nonSL7-1
YNALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECL
LTEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFS
DYRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLK
GCVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGL
LIAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLY
HTHAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,200
>KH2012:KH.C2.161.v2.A.nonSL7-1
ATTATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTTCCGACGCTCAATTAACAGAA
AGGAGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCC
GAAAATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTT
TGTTGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAG
AAGATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTA
AATCTCCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCT
CAGATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAA
CGAAAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGT
TCACCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGA
AAGGTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACA
GATTCCTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAA
CGCTCACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCT
TGCTTATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCA
TTGACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGC
CGCGACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGT
ATCACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGC
TTTGTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTT
ATTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCC
ATCCGAGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAG
TTCATCGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-62] 14.894 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[1-58] 7.7E-14 |
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-87] 1.5E-20 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[1-56] 4.0E-18 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[5-20] 7.8E-9 - T[39-47] 7.8E-9 - T[47-55] 7.8E-9 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[51-61] 3.7E-20 - T[149-170] 3.7E-20 - T[170-186] 3.7E-20 - T[231-246] 3.7E-20 - T[288-305] 3.7E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[53-69] 1.2E-6 - T[146-167] 1.2E-6 - T[172-191] 1.2E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[140-325] 1.97E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[142-304] 1.2E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[148-300] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 35.92 % | 208 | 5.43E-64 |
| NR1H4_HUMAN | 44.412 % | 265 | 2.42E-85 |
| NR1I3_HUMAN | 28.818 % | 135 | 5.6E-37 |