- Transcript 'KH2012:KH.C2.161.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v2.R.nonSL3-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,039,848]
Amino acid sequence
Length: 334
>KH.C2.161.v2.R.nonSL3-1
DRASGYHYNALTCEGCKGFFRRSINRKESHYRCKYGGKCEMDMYTRRKCPECRLRKCRAV
GMLEECLLTEIQCKSKRRSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIE
LVGKSFSDYRNNPEIVNRWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSH
DQIALLKGCVVQAMLLRNSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQM
DETEYGLLIAIIVFDSDHTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLL
TEMRTLYHTHAKMVLDWKQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,220
>KH2012:KH.C2.161.v2.R.nonSL3-1
TGACCGTGCGTCTGGATATCATTATAATGCTCTCACATGCGAAGGCTGCAAAGGATTTTT
CCGACGCTCAATTAACAGAAAGGAGTCTCATTACAGATGCAAATACGGTGGAAAGTGTGA
AATGGACATGTACACACGCCGAAAATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGT
TGGGATGTTAGAAGAATGTTTGTTGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAG
GAAAGTGAAAACAATTCAAGAAGATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCC
ACCACCCAAACCCGCAGTTAAATCTCCACCAGAACCAGATGAAACTGATTTATTAATTGA
ATTGGTTGGAAAAAGTTTCTCAGATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGA
ATGTTTTTACGAATTGTCAACGAAAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCA
CGTACAAGTGTTAGTAGAGTTCACCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACA
CGACCAGATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTG
TGGTTACAACAAGGTTAACAGATTCCTGGATCTAAAACGTGTTGTACGAGACACAGGTAT
AAAGGAAGACCATATTCGAACGCTCACTGATTTTTTTGACAATGTTGCAAAACTTCAAAT
GGATGAAACCGAATACGGCTTGCTTATTGCCATCATTGTGTTTGACTCCGATCACACCGA
CCTTGAGAACAGACTTACCATTGACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCG
TTACAGCGAGGCCCGTGAGCCGCGACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCT
TACAGAAATGCGAACACTGTATCACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAG
GGAACAGCTGACACCTTTGCTTTGTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAA
TGCCCAGGAAAGGGCATCTTATTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATT
AAGTATACACAATTGGCCCCATCCGAGCTTGCACCTGACTATTGCTATATATGCTGATGT
TTGGAATTTCCATGGTATAGTTCATCGTTGATTTTCTTTTACTGGTATACGCACAATAAA
GTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-94] 5.6E-25 |
| SMART |
Znf_hrmn_rcpt (IPR001628) - T[1-65] 1.2E-22 |
| ProSiteProfiles |
Znf_hrmn_rcpt (IPR001628) - T[1-69] 15.927 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[1-63] 2.2E-23 |
| PRINTS |
Znf_hrmn_rcpt (IPR001628) - T[12-27] 8.2E-9 - T[46-54] 8.2E-9 - T[54-62] 8.2E-9 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[58-68] 4.0E-20 - T[156-177] 4.0E-20 - T[177-193] 4.0E-20 - T[238-253] 4.0E-20 - T[295-312] 4.0E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[60-76] 1.3E-6 - T[153-174] 1.3E-6 - T[179-198] 1.3E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[147-332] 2.1E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[149-311] 1.3E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[155-307] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 36.62 % | 221 | 5.82E-69 |
| NR1H4_HUMAN | 45.533 % | 281 | 1.31E-91 |
| NR1I3_HUMAN | 29.661 % | 149 | 5.61E-42 |