- Transcript 'KH2012:KH.C2.161.v1....' >
- Transcript 'KH2012:KH.C2.161.v3....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v3.A.ND5-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,039,571]
Amino acid sequence
Length: 308
>KH.C2.161.v3.A.ND5-1
QGELNRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTIQ
EDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVNRWECFYELS
TKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNKVN
RFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDLENRLT
IDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDWKQREQLTPL
LCEIWDMR
Nucleotide sequence
Length: 1,225
>KH2012:KH.C2.161.v3.A.ND5-1
ATAGGTTTTGCCGACGGGGCATATTTAAATATTGTGCTGTTAAGTATTGTTTAACGTAAG
AGTAAAATATGTTCATGACATTAACAAGGCGAACTTAATAGATGCAAATACGGTGGAAAG
TGTGAAATGGACATGTACACACGCCGAAAATGTCCTGAATGTCGATTAAGAAAATGCAGG
GCTGTTGGGATGTTAGAAGAATGTTTGTTGACTGAAATCCAATGCAAATCAAAAAGAAGA
AGTAGGAAAGTGAAAACAATTCAAGAAGATGATGAAACAAAAGAAAGTGTACCGAATCCG
ATCCCACCACCCAAACCCGCAGTTAAATCTCCACCAGAACCAGATGAAACTGATTTATTA
ATTGAATTGGTTGGAAAAAGTTTCTCAGATTACCGGAATAATCCTGAGATAGTAAATCGT
TGGGAATGTTTTTACGAATTGTCAACGAAAACGCCTCCGAATCTTTGTGAAATCGCTACC
ATTCACGTACAAGTGTTAGTAGAGTTCACCAAGAAGTTACCAGGTTTCATGCGACTTGAC
TCACACGACCAGATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCAATGCTTCTACGAAAC
TCCTGTGGTTACAACAAGGTTAACAGATTCCTGGATCTAAAACGTGTTGTACGAGACACA
GGTATAAAGGAAGACCATATTCGAACGCTCACTGATTTTTTTGACAATGTTGCAAAACTT
CAAATGGATGAAACCGAATACGGCTTGCTTATTGCCATCATTGTGTTTGACTCCGATCAC
ACCGACCTTGAGAACAGACTTACCATTGACAAATATAGGGACCGGTACCTGTCCGCTCTC
TCGCGTTACAGCGAGGCCCGTGAGCCGCGACGTCCTCAGATCTTCGCAAAAATCCTCTCT
CTTCTTACAGAAATGCGAACACTGTATCACACCCACGCTAAAATGGTCTTGGATTGGAAA
CAAAGGGAACAGCTGACACCTTTGCTTTGTGAGATTTGGGATATGCGGTGATCGGTTTCA
GTCAATGCCCAGGAAAGGGCATCTTATTTTAACAGTTCTTTTTCGGTCAACCCGTGCAGT
AGATTAAGTATACACAATTGGCCCCATCCGAGCTTGCACCTGACTATTGCTATATATGCT
GATGTTTGGAATTTCCATGGTATAGTTCATCGTTGATTTTCTTTTACTGGTATACGCACA
ATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[2-68] 1.0E-8 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[5-37] 1.5E-6 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[32-42] 2.9E-20 - T[130-151] 2.9E-20 - T[151-167] 2.9E-20 - T[212-227] 2.9E-20 - T[269-286] 2.9E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[34-50] 1.1E-6 - T[127-148] 1.1E-6 - T[153-172] 1.1E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[121-306] 1.57E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[123-285] 1.0E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[129-281] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 33.437 % | 172 | 1.53E-50 |
| NR1H2_HUMAN | 32.632 % | 110 | 1.83E-27 |
| NR1H4_HUMAN | 41.772 % | 228 | 2.09E-71 |