- Transcript 'KH2012:KH.C2.161.v3....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v3.A.SL14-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,039,483]
Amino acid sequence
Length: 306
>KH.C2.161.v3.A.SL14-1
ELNRCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKRRSRKVKTIQED
DETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVNRWECFYELSTK
TPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLRNSCGYNKVNRF
LDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSDHTDLENRLTID
KYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDWKQREQLTPLLC
EIWDMR
Nucleotide sequence
Length: 1,137
>KH2012:KH.C2.161.v3.A.SL14-1
GCGAACTTAATAGATGCAAATACGGTGGAAAGTGTGAAATGGACATGTACACACGCCGAA
AATGTCCTGAATGTCGATTAAGAAAATGCAGGGCTGTTGGGATGTTAGAAGAATGTTTGT
TGACTGAAATCCAATGCAAATCAAAAAGAAGAAGTAGGAAAGTGAAAACAATTCAAGAAG
ATGATGAAACAAAAGAAAGTGTACCGAATCCGATCCCACCACCCAAACCCGCAGTTAAAT
CTCCACCAGAACCAGATGAAACTGATTTATTAATTGAATTGGTTGGAAAAAGTTTCTCAG
ATTACCGGAATAATCCTGAGATAGTAAATCGTTGGGAATGTTTTTACGAATTGTCAACGA
AAACGCCTCCGAATCTTTGTGAAATCGCTACCATTCACGTACAAGTGTTAGTAGAGTTCA
CCAAGAAGTTACCAGGTTTCATGCGACTTGACTCACACGACCAGATAGCTTTACTGAAAG
GTTGTGTTGTGCAAGCAATGCTTCTACGAAACTCCTGTGGTTACAACAAGGTTAACAGAT
TCCTGGATCTAAAACGTGTTGTACGAGACACAGGTATAAAGGAAGACCATATTCGAACGC
TCACTGATTTTTTTGACAATGTTGCAAAACTTCAAATGGATGAAACCGAATACGGCTTGC
TTATTGCCATCATTGTGTTTGACTCCGATCACACCGACCTTGAGAACAGACTTACCATTG
ACAAATATAGGGACCGGTACCTGTCCGCTCTCTCGCGTTACAGCGAGGCCCGTGAGCCGC
GACGTCCTCAGATCTTCGCAAAAATCCTCTCTCTTCTTACAGAAATGCGAACACTGTATC
ACACCCACGCTAAAATGGTCTTGGATTGGAAACAAAGGGAACAGCTGACACCTTTGCTTT
GTGAGATTTGGGATATGCGGTGATCGGTTTCAGTCAATGCCCAGGAAAGGGCATCTTATT
TTAACAGTTCTTTTTCGGTCAACCCGTGCAGTAGATTAAGTATACACAATTGGCCCCATC
CGAGCTTGCACCTGACTATTGCTATATATGCTGATGTTTGGAATTTCCATGGTATAGTTC
ATCGTTGATTTTCTTTTACTGGTATACGCACAATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[1-66] 1.8E-8 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[4-35] 2.4E-6 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[30-40] 2.8E-20 - T[128-149] 2.8E-20 - T[149-165] 2.8E-20 - T[210-225] 2.8E-20 - T[267-284] 2.8E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[32-48] 1.0E-6 - T[125-146] 1.0E-6 - T[151-170] 1.0E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[119-304] 1.57E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[121-283] 1.0E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[127-279] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 33.437 % | 172 | 1.75E-50 |
| NR1H2_HUMAN | 32.632 % | 110 | 1.92E-27 |
| NR1H4_HUMAN | 41.772 % | 228 | 2.04E-71 |