- Transcript 'KH2012:KH.C2.161.v4....'
Transcript Model
Transcript Id
KH2012:KH.C2.161.v4.A.ND9-1
Possible name(s)
NR1H3; NR1H4; THRB
Gene model
Location
KhC2 [5,033,578 / 5,039,577]
Amino acid sequence
Length: 317
>KH.C2.161.v4.A.ND9-1
HFIGFADGAYLNIVLCKYGGKCEMDMYTRRKCPECRLRKCRAVGMLEECLLTEIQCKSKR
RSRKVKTIQEDDETKESVPNPIPPPKPAVKSPPEPDETDLLIELVGKSFSDYRNNPEIVN
RWECFYELSTKTPPNLCEIATIHVQVLVEFTKKLPGFMRLDSHDQIALLKGCVVQAMLLR
NSCGYNKVNRFLDLKRVVRDTGIKEDHIRTLTDFFDNVAKLQMDETEYGLLIAIIVFDSD
HTDLENRLTIDKYRDRYLSALSRYSEAREPRRPQIFAKILSLLTEMRTLYHTHAKMVLDW
KQREQLTPLLCEIWDMR
Nucleotide sequence
Length: 1,168
>KH2012:KH.C2.161.v4.A.ND9-1
CACTTCATAGGTTTTGCCGACGGGGCATATTTAAATATTGTGCTATGCAAATACGGTGGA
AAGTGTGAAATGGACATGTACACACGCCGAAAATGTCCTGAATGTCGATTAAGAAAATGC
AGGGCTGTTGGGATGTTAGAAGAATGTTTGTTGACTGAAATCCAATGCAAATCAAAAAGA
AGAAGTAGGAAAGTGAAAACAATTCAAGAAGATGATGAAACAAAAGAAAGTGTACCGAAT
CCGATCCCACCACCCAAACCCGCAGTTAAATCTCCACCAGAACCAGATGAAACTGATTTA
TTAATTGAATTGGTTGGAAAAAGTTTCTCAGATTACCGGAATAATCCTGAGATAGTAAAT
CGTTGGGAATGTTTTTACGAATTGTCAACGAAAACGCCTCCGAATCTTTGTGAAATCGCT
ACCATTCACGTACAAGTGTTAGTAGAGTTCACCAAGAAGTTACCAGGTTTCATGCGACTT
GACTCACACGACCAGATAGCTTTACTGAAAGGTTGTGTTGTGCAAGCAATGCTTCTACGA
AACTCCTGTGGTTACAACAAGGTTAACAGATTCCTGGATCTAAAACGTGTTGTACGAGAC
ACAGGTATAAAGGAAGACCATATTCGAACGCTCACTGATTTTTTTGACAATGTTGCAAAA
CTTCAAATGGATGAAACCGAATACGGCTTGCTTATTGCCATCATTGTGTTTGACTCCGAT
CACACCGACCTTGAGAACAGACTTACCATTGACAAATATAGGGACCGGTACCTGTCCGCT
CTCTCGCGTTACAGCGAGGCCCGTGAGCCGCGACGTCCTCAGATCTTCGCAAAAATCCTC
TCTCTTCTTACAGAAATGCGAACACTGTATCACACCCACGCTAAAATGGTCTTGGATTGG
AAACAAAGGGAACAGCTGACACCTTTGCTTTGTGAGATTTGGGATATGCGGTGATCGGTT
TCAGTCAATGCCCAGGAAAGGGCATCTTATTTTAACAGTTCTTTTTCGGTCAACCCGTGC
AGTAGATTAAGTATACACAATTGGCCCCATCCGAGCTTGCACCTGACTATTGCTATATAT
GCTGATGTTTGGAATTTCCATGGTATAGTTCATCGTTGATTTTCTTTTACTGGTATACGC
ACAATAAAGTATATATGGCTTTACTAAA
| Gene3D |
Znf_NHR/GATA (IPR013088) - T[8-77] 1.8E-9 |
| Pfam |
Znf_hrmn_rcpt (IPR001628) - T[14-46] 5.1E-7 |
| PRINTS |
Nuclear_hrmn_rcpt (IPR001723) - T[41-51] 3.2E-20 - T[139-160] 3.2E-20 - T[160-176] 3.2E-20 - T[221-236] 3.2E-20 - T[278-295] 3.2E-20 |
| PRINTS |
ThyrH_rcpt (IPR001728) - T[43-59] 1.1E-6 - T[136-157] 1.1E-6 - T[162-181] 1.1E-6 |
| SUPERFAMILY |
NHR_like_dom_sf (IPR035500) - T[130-315] 1.84E-52 |
| Pfam |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[132-294] 1.1E-23 |
| SMART |
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[138-290] 5.2E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NR1H3_HUMAN | 33.333 % | 173 | 1.06E-50 |
| NR1H2_HUMAN | 32.632 % | 110 | 3.79E-27 |
| NR1H4_HUMAN | 41.905 % | 227 | 5.89E-71 |