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TRANSCRIPT CARD

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  1. EST 'AHC0AAA229YO06_RM1' > 
  2. Transcript 'KH2012:KH.S1107.2.v2...' > 
  3. Transcript 'KH2012:KH.C2.204.v1....'

Transcript Model

Transcript Id

KH2012:KH.C2.204.v1.A.SL2-1

Possible name(s)

LDB3; PDLIM1; PDLIM4

Gene model

KH2012:KH.C2.204

Location

KhC2 [1,484,656 / 1,488,064]

Sequences

Amino acid sequence

Length: 405

>KH.C2.204.v1.A.SL2-1
AAFIRMPYEVSMSGGSPWGFRLTGGVVNGTPVTVSRVTPGGKAAQANVMQGDVLVALNGT
SISDMDLPEIMEQVKISGWTIHLTLLSQEEIEHSSQMKRKSESNFTSVTELERPRSQLAM
TPCSERPSSKLRLRSVDKKIMGRKKKKSPPIPPDNHGNHRSSNNMPRIVIKVGGRANNSQ
PIVDDSSFHNGDEPISPVKAFSVDNVSERSASPQVAPKPKPRKTVQPQEVDIEQEEECTE
QSSKPEKKVPDFIRRQIKPTKPLPQEFKPQVSWLHNKLRLKLKPGQALTDPGNSLKAAAA
AYPCQPIEIEGPVSATIVHAQYNTPVGMYSANQIVNTLVTTAHAQGADVPEPQSIFGDQE
VPVDTNTPVFKLVHKSERSTPTPAQSRSIQILDALLDYENGDLKI

Nucleotide sequence

Length: 1,332

>KH2012:KH.C2.204.v1.A.SL2-1
AATTTAAGATCAAAGTTTAGACTTTTAGGCTGCGTTCATAAGGATGCCGTATGAAGTTTC
GATGTCTGGTGGAAGTCCATGGGGCTTCAGGCTCACCGGTGGGGTCGTTAACGGTACCCC
GGTCACCGTTTCCAGGGTCACCCCTGGTGGTAAAGCTGCCCAGGCCAATGTAATGCAAGG
AGATGTACTTGTGGCATTGAACGGAACCTCCATTAGCGACATGGACTTGCCAGAAATCAT
GGAACAAGTCAAGATATCAGGATGGACAATTCATTTGACTCTTTTGAGCCAAGAGGAGAT
CGAACACTCATCGCAGATGAAGAGAAAATCGGAATCAAACTTCACATCCGTAACTGAATT
AGAACGCCCACGAAGCCAGTTGGCAATGACACCATGCAGTGAACGGCCGTCAAGCAAGTT
AAGGCTGCGATCTGTTGATAAAAAGATTATGGGACGAAAGAAGAAAAAGTCCCCACCCAT
TCCTCCTGATAACCATGGCAACCATAGAAGTAGTAATAACATGCCACGAATTGTGATCAA
AGTTGGTGGTCGTGCGAATAATTCGCAACCTATAGTCGACGATTCGAGCTTCCACAACGG
CGATGAACCCATTTCGCCAGTGAAAGCTTTCAGCGTTGACAACGTCAGTGAACGAAGTGC
AAGTCCGCAAGTCGCACCGAAGCCCAAGCCACGTAAAACTGTGCAACCGCAAGAGGTCGA
TATTGAGCAAGAAGAGGAATGTACCGAGCAGTCAAGTAAACCAGAAAAGAAGGTCCCTGA
TTTCATTAGAAGACAAATCAAACCGACGAAGCCTTTGCCACAGGAATTCAAACCTCAAGT
TTCGTGGCTCCATAACAAGCTTCGATTAAAATTGAAACCAGGACAGGCATTAACTGACCC
CGGTAATTCACTGAAGGCTGCAGCAGCTGCTTACCCTTGTCAACCTATTGAGATTGAGGG
TCCAGTGTCAGCAACGATTGTGCATGCCCAGTACAATACACCGGTCGGTATGTACAGTGC
CAACCAGATCGTGAACACGCTCGTCACCACAGCGCATGCGCAGGGTGCAGATGTCCCAGA
ACCACAATCTATCTTTGGAGACCAGGAAGTACCAGTTGATACAAATACACCCGTGTTCAA
GCTAGTGCACAAGTCTGAGCGATCTACGCCGACTCCAGCTCAGTCAAGATCTATTCAAAT
ACTGGATGCGCTGTTGGACTATGAGAACGGAGACCTGAAAATCTAAGACGTGGATCGCAT
TGTATCGTGTTATGCCTTTACTTTGAAAGTTTAACTTTAAATGTAAATATAAACTTAAAT
TTGGACGCAGAA

InterProScan

ProSiteProfiles
PDZ (IPR001478) - T[5-89] 14.496
SUPERFAMILY
PDZ_sf (IPR036034) - T[10-91] 1.1E-16
Pfam
PDZ (IPR001478) - T[11-85] 2.6E-11
SMART
PDZ (IPR001478) - T[16-89] 2.8E-12
Pfam
DUF4749 (IPR031847) - T[316-399] 2.6E-15
SMART
Zasp-like_motif (IPR006643) - T[316-341] 2.7E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
LDB3_HUMAN 43.75 % 79.7 5.75E-16