- Transcript 'KH2012:KH.C2.236.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.236.v1.R.ND1-1
Possible name(s)
COL14A1; COL24A1; COL6A2
Gene model
Location
KhC2 [7,656,429 / 7,670,990]
Amino acid sequence
Length: 665
>KH.C2.236.v1.R.ND1-1
FLHHKTSLTAMKVLCVAVALILLINTDASGKRHKMQTSVRNVQGDDPLLEVEPIPPDTML
GECSCKCCENTPAPIIQPKCANDIIMAVDSSACFRDHHAKMMRFLRKLVRRIGRTENIQY
GGTETRLGIMQFSSDILFPLHLNSFEDYTNPSTRRGLMSGIEQALSTLGFLGEGSFLNKA
LNATVDHFQSEPRPEELLTQISPQTPKPVVILMTNGKSHPSVTMDDIELSIAGLKAAGVT
VIPVSVTRECHGVQNDVWNEGLCPDTIILNKLAKVGRDETSTFFEMKSHDVLADVINELT
CYSHGPANLVAPCNNCTCSCELPIGPIGPDGPKGQKGEPIKGEQGPKGELGIPGIDGLDG
DKGEVGNKGDNGEKGDIGPKGVIGDIGAKGDKGEFGDKGDTGFKGEIGEKGDLGKKGIKG
TVGEKGDVGQKGNIGDKGEIGEDGPEGPKGTKGNQGDQGEKGVGEKGGKGETGPEGSKGD
TGNKGNTGNKGNKGMIGLCGKPGPAGKPGVEGVAGLDGLDGGPGQPGIQGPRGPRGDDGD
KGEPGPQGASGFPGQRGLAGERGPIGPQGLNGGKGEKGEPSSELGLPGLPGSSGLVGEPG
RDGADGLDGAQGVPGDRGPRGEPGPRGHPGTYDLDELRGVISEIVRELLPGDCAARKSVL
FKPSL
Nucleotide sequence
Length: 2,394
>KH2012:KH.C2.236.v1.R.ND1-1
TTTTAAGTAGGAATTTTAATTCTTGCATCATAAGACCTCATTAACAGCCATGAAGGTTCT
TTGCGTGGCAGTAGCGCTGATACTGCTGATAAACACCGATGCATCAGGAAAGCGTCACAA
GATGCAAACTAGCGTGAGAAACGTCCAGGGAGACGATCCGCTTCTGGAAGTTGAACCGAT
TCCCCCGGACACGATGCTCGGCGAATGCTCGTGCAAATGCTGTGAGAACACCCCAGCACC
TATCATCCAACCAAAATGTGCCAATGACATCATCATGGCTGTGGACAGCAGCGCTTGCTT
CCGTGACCACCACGCGAAGATGATGAGGTTCCTCCGGAAACTAGTAAGAAGGATCGGAAG
AACTGAAAACATTCAATACGGAGGAACAGAAACAAGGCTGGGAATAATGCAGTTCAGCAG
CGACATTCTCTTCCCTCTCCATCTTAACTCCTTCGAAGATTACACCAATCCATCAACACG
TAGGGGGTTAATGTCCGGTATTGAACAAGCCTTATCTACTCTCGGTTTCCTCGGTGAAGG
ATCTTTCCTTAACAAAGCCTTGAACGCGACCGTTGACCATTTCCAAAGCGAGCCACGCCC
GGAAGAACTTCTTACGCAGATTTCCCCACAAACCCCAAAGCCGGTCGTTATTTTAATGAC
GAATGGTAAAAGCCACCCAAGTGTGACTATGGATGACATTGAGCTCTCTATTGCTGGTTT
GAAAGCAGCTGGAGTCACAGTTATTCCAGTTTCCGTCACCCGGGAATGCCATGGAGTTCA
GAATGATGTTTGGAACGAGGGCTTGTGTCCTGATACAATCATTTTGAACAAGTTAGCCAA
AGTTGGAAGAGACGAAACCTCAACTTTCTTTGAGATGAAGTCTCATGACGTATTGGCTGA
CGTCATCAACGAGCTTACATGTTACTCCCATGGACCTGCAAACTTAGTAGCACCTTGCAA
TAACTGCACTTGCTCTTGCGAGCTTCCCATCGGACCCATTGGACCGGACGGACCGAAAGG
TCAGAAAGGAGAACCGATCAAGGGTGAGCAAGGACCAAAAGGAGAACTCGGAATCCCCGG
TATTGACGGCTTGGACGGCGACAAGGGAGAAGTGGGCAACAAGGGAGACAACGGAGAGAA
AGGAGATATTGGTCCTAAGGGAGTAATCGGAGACATTGGAGCAAAGGGCGACAAAGGCGA
ATTCGGCGACAAAGGTGACACTGGATTCAAAGGAGAAATCGGAGAAAAGGGAGACCTTGG
AAAAAAAGGAATAAAGGGTACCGTTGGTGAAAAAGGAGACGTCGGGCAGAAGGGGAATAT
TGGGGACAAGGGAGAAATCGGCGAAGACGGCCCAGAAGGTCCAAAGGGAACCAAGGGAAA
CCAGGGAGATCAGGGCGAAAAGGGAGTTGGCGAAAAGGGTGGCAAAGGCGAGACTGGCCC
AGAAGGTTCGAAAGGAGACACCGGTAATAAAGGAAACACAGGAAATAAGGGTAACAAGGG
TATGATTGGACTGTGTGGAAAGCCTGGACCTGCTGGAAAACCTGGTGTTGAAGGCGTCGC
TGGTTTGGACGGTCTGGATGGCGGACCCGGTCAACCAGGTATCCAAGGACCAAGGGGACC
TCGCGGAGACGATGGCGACAAGGGTGAACCAGGTCCACAGGGAGCATCTGGTTTCCCGGG
ACAACGTGGTTTAGCAGGAGAGAGAGGACCAATTGGACCACAGGGTTTGAACGGAGGCAA
AGGAGAGAAGGGCGAACCATCAAGTGAATTGGGACTCCCAGGGTTGCCCGGAAGTTCTGG
TCTAGTTGGTGAACCAGGTCGAGATGGTGCTGACGGATTGGACGGCGCACAAGGTGTACC
CGGTGATCGGGGACCAAGAGGGGAACCGGGACCTCGTGGCCACCCAGGGACTTATGATTT
AGACGAACTACGTGGAGTGATCAGCGAGATTGTAAGGGAATTGTTGCCCGGAGATTGCGC
TGCACGTAAGTCGGTCTTATTTAAGCCATCGTTGTGAGGTACACTTGCATGGCGTGCTTG
CCCGTTTGCATTTCTTTGTCGCGCACATTCGTTCAGGCCTGTACATTTTAAGATCCAATC
ATGTTTTGCAGTTGTTTGAAAAATATATATTCAGTTTAAAGTATTTCGCGATACCACATT
TCATCATTTAGTTAAAACGCTGCGTACTTTTGTTTTTTTCTGAGATTTTATCGTGTTTTG
CATTTTTTTGTAAAAGATCTATTTGTTCGACCACGCGCTTGTAGAACTCATAGAAAACGC
TAACACTGTTAACATACAATCTTCCATGTAAAACGCTCAGTAAACAAGCGTAATGTTTAT
ACATAAGAAGCTTAGTAAATCAAATTTGCACATACGAGATTGCGGTAAGATGAA
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[68-297] 1.37E-17 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[74-303] 2.6E-16 |
| SMART |
VWF_A (IPR002035) - T[81-292] 4.7E-5 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[83-299] 16.61 |
| Pfam |
VWF_A (IPR002035) - T[83-262] 1.0E-11 |
| Pfam |
Collagen (IPR008160) - T[325-381] 3.4E-7 - T[369-426] 8.7E-7 - T[405-462] 2.0E-8 - T[467-521] 4.2E-7 - T[524-580] 5.0E-8 - T[585-631] 6.1E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 39.942 % | 144 | 1.96E-35 |
| CO5A2_HUMAN | 34.725 % | 136 | 3.88E-33 |
| COSA1_HUMAN | 30.719 % | 140 | 1.7E-34 |