- Transcript 'KH2012:KH.C2.236.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.236.v2.R.ND1-2
Possible name(s)
COL14A1; COL24A1; COL6A2
Gene model
Location
KhC2 [7,653,347 / 7,670,990]
Amino acid sequence
Length: 687
>KH.C2.236.v2.R.ND1-2
FLHHKTSLTAMKVLCVAVALILLINTDASGKRHKMQTSVRNVQGDDPLLEVEPIPPDTML
GECSCKCCENTPAPIIQPKCANDIIMAVDSSACFRDHHAKMMRFLRKLVRRIGRTENIQY
GGTETRLGIMQFSSDILFPLHLNSFEDYTNPSTRRGLMSGIEQALSTLGFLGEGSFLNKA
LNATVDHFQSEPRPEELLTQISPQTPKPVVILMTNGKSHPSVTMDDIELSIAGLKAAGVT
VIPVSVTRECHGVQNDVWNEGLCPDTIILNKLAKVGRDETSTFFEMKSHDVLADVINELT
CYSHGPANLVAPCNNCTCSCELPIGPIGPDGPKGQKGEPIKGEQGPKGELGIPGIDGLDG
DKGEVGNKGDNGEKGDIGPKGVIGDIGAKGDKGEFGDKGDTGFKGEIGEKGDLGKKGIKG
TVGEKGDVGQKGNIGDKGEIGEDGPEGPKGTKGNQGDQGEKGVGEKGGKGETGPEGSKGD
TGNKGNTGNKGNKGMIGLCGKPGPAGKPGVEGVAGLDGLDGGPGQPGIQGPRGPRGDDGD
KGEPGPQGASGFPGQRGLAGERGPIGPQGLNGGKGEKGEPSSELGLPGLPGSSGLVGEPG
RDGADGLDGAQGVPGDRGPRGEPGPRGHPGTYDLDELRGVISEIVRELLPGDCAALDEEP
APPDVTTVSRRRRHHGRKAEHKGAKQD
Nucleotide sequence
Length: 2,633
>KH2012:KH.C2.236.v2.R.ND1-2
TTTTAAGTAGGAATTTTAATTCTTGCATCATAAGACCTCATTAACAGCCATGAAGGTTCT
TTGCGTGGCAGTAGCGCTGATACTGCTGATAAACACCGATGCATCAGGAAAGCGTCACAA
GATGCAAACTAGCGTGAGAAACGTCCAGGGAGACGATCCGCTTCTGGAAGTTGAACCGAT
TCCCCCGGACACGATGCTCGGCGAATGCTCGTGCAAATGCTGTGAGAACACCCCAGCACC
TATCATCCAACCAAAATGTGCCAATGACATCATCATGGCTGTGGACAGCAGCGCTTGCTT
CCGTGACCACCACGCGAAGATGATGAGGTTCCTCCGGAAACTAGTAAGAAGGATCGGAAG
AACTGAAAACATTCAATACGGAGGAACAGAAACAAGGCTGGGAATAATGCAGTTCAGCAG
CGACATTCTCTTCCCTCTCCATCTTAACTCCTTCGAAGATTACACCAATCCATCAACACG
TAGGGGGTTAATGTCCGGTATTGAACAAGCCTTATCTACTCTCGGTTTCCTCGGTGAAGG
ATCTTTCCTTAACAAAGCCTTGAACGCGACCGTTGACCATTTCCAAAGCGAGCCACGCCC
GGAAGAACTTCTTACGCAGATTTCCCCACAAACCCCAAAGCCGGTCGTTATTTTAATGAC
GAATGGTAAAAGCCACCCAAGTGTGACTATGGATGACATTGAGCTCTCTATTGCTGGTTT
GAAAGCAGCTGGAGTCACAGTTATTCCAGTTTCCGTCACCCGGGAATGCCATGGAGTTCA
GAATGATGTTTGGAACGAGGGCTTGTGTCCTGATACAATCATTTTGAACAAGTTAGCCAA
AGTTGGAAGAGACGAAACCTCAACTTTCTTTGAGATGAAGTCTCATGACGTATTGGCTGA
CGTCATCAACGAGCTTACATGTTACTCCCATGGACCTGCAAACTTAGTAGCACCTTGCAA
TAACTGCACTTGCTCTTGCGAGCTTCCCATCGGACCCATTGGACCGGACGGACCGAAAGG
TCAGAAAGGAGAACCGATCAAGGGTGAGCAAGGACCAAAAGGAGAACTCGGAATCCCCGG
TATTGACGGCTTGGACGGCGACAAGGGAGAAGTGGGCAACAAGGGAGACAACGGAGAGAA
AGGAGATATTGGTCCTAAGGGAGTAATCGGAGACATTGGAGCAAAGGGCGACAAAGGCGA
ATTCGGCGACAAAGGTGACACTGGATTCAAAGGAGAAATCGGAGAAAAGGGAGACCTTGG
AAAAAAAGGAATAAAGGGTACCGTTGGTGAAAAAGGAGACGTCGGGCAGAAGGGGAATAT
TGGGGACAAGGGAGAAATCGGCGAAGACGGCCCAGAAGGTCCAAAGGGAACCAAGGGAAA
CCAGGGAGATCAGGGCGAAAAGGGAGTTGGCGAAAAGGGTGGCAAAGGCGAGACTGGCCC
AGAAGGTTCGAAAGGAGACACCGGTAATAAAGGAAACACAGGAAATAAGGGTAACAAGGG
TATGATTGGACTGTGTGGAAAGCCTGGACCTGCTGGAAAACCTGGTGTTGAAGGCGTCGC
TGGTTTGGACGGTCTGGATGGCGGACCCGGTCAACCAGGTATCCAAGGACCAAGGGGACC
TCGCGGAGACGATGGCGACAAGGGTGAACCAGGTCCACAGGGAGCATCTGGTTTCCCGGG
ACAACGTGGTTTAGCAGGAGAGAGAGGACCAATTGGACCACAGGGTTTGAACGGAGGCAA
AGGAGAGAAGGGCGAACCATCAAGTGAATTGGGACTCCCAGGGTTGCCCGGAAGTTCTGG
TCTAGTTGGTGAACCAGGTCGAGATGGTGCTGACGGATTGGACGGCGCACAAGGTGTACC
CGGTGATCGGGGACCAAGAGGGGAACCGGGACCTCGTGGCCACCCAGGGACTTATGATTT
AGACGAACTACGTGGAGTGATCAGCGAGATTGTAAGGGAATTGTTGCCCGGAGATTGCGC
TGCACTAGACGAGGAGCCCGCACCCCCGGATGTCACAACCGTTTCGCGCCGACGACGTCA
TCATGGCCGCAAAGCAGAGCACAAAGGGGCGAAACAGGATTAGTGACGTCATCGCAAAGA
AACCCCAAGTTCCTTACATGAAAAGCACGGACCCCTCATACCCGAATTTAACACAACAGA
ACAAACGACTTTATTAATATTGCGAGCAGAACACAAAGCTTACAGTTCAAATCGCTTTTT
ACCGCTTTCTATAGTAATCTAAATAATCAGCATACTTGCTCAGCATAACCAAATATGCCT
TATATCTGTTTAGGTGTGATTTTCGCTTTTATAGCAGGGTGGGGTAAGATGGGACAACTT
TTCACTCCATTTTTTTATTTTGCCCCACTTTATAATCTAATTATAAAACCGTATCCTCAC
GACTCCCATAGACCGTTGTTAATTGTTTAAAACACGATCAGGATATGTTGATATTATGTG
CTAAAGGTGTCCCGTCTTCCCCCACCCTACTATATGTATACTGTAGCTCGCCTTTATAAC
TAACACAGTAGAACGCTTAACTATAATTGCTGGTAGAATCCGTAATCGAAGTCATCAATT
TATAATCCGTCTGTATCATCGCTGGTTTAAATAAACTCATAAAAAAGACCAAA
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[68-297] 1.46E-17 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[74-303] 2.8E-16 |
| SMART |
VWF_A (IPR002035) - T[81-292] 4.7E-5 |
| Pfam |
VWF_A (IPR002035) - T[83-262] 1.1E-11 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[83-299] 16.61 |
| Pfam |
Collagen (IPR008160) - T[325-381] 3.6E-7 - T[369-426] 2.8E-8 - T[467-521] 1.3E-7 - T[524-580] 4.7E-8 - T[585-631] 6.3E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COOA1_HUMAN | 39.942 % | 144 | 1.18E-35 |
| CO7A1_HUMAN | 39.669 % | 136 | 7.06E-33 |
| COSA1_HUMAN | 30.719 % | 141 | 1.33E-34 |