- Transcript 'KH2012:KH.C1.1001.v1...' >
- Transcript 'KH2012:KH.C2.236.v3....'
Transcript Model
Transcript Id
KH2012:KH.C2.236.v3.A.SL2-3
Possible name(s)
COL14A1; COL24A1; COL6A2
Gene model
Location
KhC2 [7,647,245 / 7,670,992]
Amino acid sequence
Length: 941
>KH.C2.236.v3.A.SL2-3
FLHHKTSLTAMKVLCVAVALILLINTDASGKRHKMQTSVRNVQGDDPLLEVEPIPPDTML
GECSCKCCENTPAPIIQPKCANDIIMAVDSSACFRDHHAKMMRFLRKLVRRIGRTENIQY
GGTETRLGIMQFSSDILFPLHLNSFEDYTNPSTRRGLMSGIEQALSTLGFLGEGSFLNKA
LNATVDHFQSEPRPEELLTQISPQTPKPVVILMTNGKSHPSVTMDDIELSIAGLKAAGVT
VIPVSVTRECHGVQNDVWNEGLCPDTIILNKLAKVGRDETSTFFEMKSHDVLADVINELT
CYSHGPANLVAPCNNCTCSCELPIGPIGPDGPKGQKGEPIKGEQGPKGELGIPGIDGLDG
DKGEVGNKGDNGEKGDIGPKGVIGDIGAKGDKGEFGDKGDTGFKGEIGEKGDLGKKGIKG
TVGEKGDVGQKGNIGDKGEIGEDGPEGPKGTKGNQGDQGEKGVGEKGGKGETGPEGSKGD
TGNKGNTGNKGNKGMIGLCGKPGPAGKPGVEGVAGLDGLDGGPGQPGIQGPRGPRGDDGD
KGEPGPQGASGFPGQRGLAGERGPIGPQGLNGGKGEKGEPSSELGLPGLPGSSGLVGEPG
RDGADGLDGAQGVPGDRGPRGEPGPRGHPGTYDLDELRGVISEIVRELLPGDCAALDEEP
APPDVTTVVAPTTTSIATTTTVAPTTTTIKPTPTPTVPTAAPTSPSGIGCSNARVDLAFV
LDGSASVGEDGFVLLREFLINVVSAFTNIGNDGVQVAMIQYNDNPRMEFDFEQTVDKTSV
LDAIDGLVYMGGNTKTGLALTFLQSAYEDARPHSDKVAVVVTDGRSQDDVIIPSQQLKRE
GTTIFAIGVGEAERMELVEMASVPVDKFVFSVDDYTDIASIQENLIKQICGVTRGVFRSA
AGVDFTPEDDKLIPVVTTTSPILEEEYDGSGELEYEYEGSS
Nucleotide sequence
Length: 3,149
>KH2012:KH.C2.236.v3.A.SL2-3
GATTTTAAGTAGGAATTTTAATTCTTGCATCATAAGACCTCATTAACAGCCATGAAGGTT
CTTTGCGTGGCAGTAGCGCTGATACTGCTGATAAACACCGATGCATCAGGAAAGCGTCAC
AAGATGCAAACTAGCGTGAGAAACGTCCAGGGAGACGATCCGCTTCTGGAAGTTGAACCG
ATTCCCCCGGACACGATGCTCGGCGAATGCTCGTGCAAATGCTGTGAGAACACCCCAGCA
CCTATCATCCAACCAAAATGTGCCAATGACATCATCATGGCTGTGGACAGCAGCGCTTGC
TTCCGTGACCACCACGCGAAGATGATGAGGTTCCTCCGGAAACTAGTAAGAAGGATCGGA
AGAACTGAAAACATTCAATACGGAGGAACAGAAACAAGGCTGGGAATAATGCAGTTCAGC
AGCGACATTCTCTTCCCTCTCCATCTTAACTCCTTCGAAGATTACACCAATCCATCAACA
CGTAGGGGGTTAATGTCCGGTATTGAACAAGCCTTATCTACTCTCGGTTTCCTCGGTGAA
GGATCTTTCCTTAACAAAGCCTTGAACGCGACCGTTGACCATTTCCAAAGCGAGCCACGC
CCGGAAGAACTTCTTACGCAGATTTCCCCACAAACCCCAAAGCCGGTCGTTATTTTAATG
ACGAATGGTAAAAGCCACCCAAGTGTGACTATGGATGACATTGAGCTCTCTATTGCTGGT
TTGAAAGCAGCTGGAGTCACAGTTATTCCAGTTTCCGTCACCCGGGAATGCCATGGAGTT
CAGAATGATGTTTGGAACGAGGGCTTGTGTCCTGATACAATCATTTTGAACAAGTTAGCC
AAAGTTGGAAGAGACGAAACCTCAACTTTCTTTGAGATGAAGTCTCATGACGTATTGGCT
GACGTCATCAACGAGCTTACATGTTACTCCCATGGACCTGCAAACTTAGTAGCACCTTGC
AATAACTGCACTTGCTCTTGCGAGCTTCCCATCGGACCCATTGGACCGGACGGACCGAAA
GGTCAGAAAGGAGAACCGATCAAGGGTGAGCAAGGACCAAAAGGAGAACTCGGAATCCCC
GGTATTGACGGCTTGGACGGCGACAAGGGAGAAGTGGGCAACAAGGGAGACAACGGAGAG
AAAGGAGATATTGGTCCTAAGGGAGTAATCGGAGACATTGGAGCAAAGGGCGACAAAGGC
GAATTCGGCGACAAAGGTGACACTGGATTCAAAGGAGAAATCGGAGAAAAGGGAGACCTT
GGAAAAAAAGGAATAAAGGGTACCGTTGGTGAAAAAGGAGACGTCGGGCAGAAGGGGAAT
ATTGGGGACAAGGGAGAAATCGGCGAAGACGGCCCAGAAGGTCCAAAGGGAACCAAGGGA
AACCAGGGAGATCAGGGCGAAAAGGGAGTTGGCGAAAAGGGTGGCAAAGGCGAGACTGGC
CCAGAAGGTTCGAAAGGAGACACCGGTAATAAAGGAAACACAGGAAATAAGGGTAACAAG
GGTATGATTGGACTGTGTGGAAAGCCTGGACCTGCTGGAAAACCTGGTGTTGAAGGCGTC
GCTGGTTTGGACGGTCTGGATGGCGGACCCGGTCAACCAGGTATCCAAGGACCAAGGGGA
CCTCGCGGAGACGATGGCGACAAGGGTGAACCAGGTCCACAGGGAGCATCTGGTTTCCCG
GGACAACGTGGTTTAGCAGGAGAGAGAGGACCAATTGGACCACAGGGTTTGAACGGAGGC
AAAGGAGAGAAGGGCGAACCATCAAGTGAATTGGGACTCCCAGGGTTGCCCGGAAGTTCT
GGTCTAGTTGGTGAACCAGGTCGAGATGGTGCTGACGGATTGGACGGCGCACAAGGTGTA
CCCGGTGATCGGGGACCAAGAGGGGAACCGGGACCTCGTGGCCACCCAGGGACTTATGAT
TTAGACGAACTACGTGGAGTGATCAGCGAGATTGTAAGGGAATTGTTGCCCGGAGATTGC
GCTGCACTAGACGAGGAGCCCGCACCCCCGGATGTCACAACCGTTGTCGCACCTACCACA
ACTAGCATCGCCACGACCACAACAGTAGCGCCAACCACAACGACAATCAAACCAACCCCA
ACCCCCACAGTTCCAACTGCAGCCCCTACCAGCCCTTCCGGTATCGGGTGCTCCAACGCG
CGGGTTGACCTCGCTTTTGTGCTTGACGGAAGCGCTTCAGTGGGCGAAGATGGTTTCGTC
CTTCTAAGGGAGTTCCTCATAAACGTTGTCAGTGCTTTCACTAACATCGGTAACGACGGA
GTGCAGGTCGCTATGATTCAGTACAATGATAATCCAAGGATGGAATTTGACTTCGAGCAA
ACTGTGGATAAGACTAGCGTTCTGGACGCCATTGACGGTCTTGTATACATGGGCGGCAAC
ACTAAGACGGGACTTGCTCTGACCTTCTTACAGAGCGCATATGAAGATGCTAGACCGCAC
TCTGATAAGGTTGCTGTGGTTGTTACTGACGGAAGAAGTCAGGATGACGTAATAATACCA
TCACAACAGTTGAAACGAGAAGGAACTACGATATTCGCCATTGGCGTGGGTGAAGCCGAG
AGAATGGAACTCGTCGAAATGGCGTCTGTACCGGTTGACAAATTCGTCTTCTCGGTCGAT
GATTACACCGACATCGCCAGCATTCAAGAAAATTTGATTAAACAGATCTGCGGCGTTACT
CGTGGAGTGTTTAGATCCGCAGCGGGAGTGGATTTCACGCCAGAGGACGACAAACTGATT
CCAGTTGTTACCACTACGTCGCCAATATTAGAAGAAGAATACGATGGATCCGGCGAACTT
GAATATGAATACGAAGGATCTTCCTAACTTTAGAGGCTTTCTTCTCACCTACGTCAGCAT
ATATTGCCGCATGATCTGGCATTGTTAATTCATTATCACCGCGCTGTACAGTTCCTATAG
TGGGGGTAAGATGGGAGATGTTTACGTTATCTTTTATCTTCCCATTTGAATTTGCAGAAT
TATATAACGGTATCCTCGTGACTTTTAAAAAACGTCGTTGATTGCTAGAACACGGTTAGG
AAATTGTGACATTATGTGCCAACAGTATCCCATCTTACCCCACAGTACCCTACACAAAAT
GTTGTTTTCAGCATATAAGCCGGATTTTA
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[68-297] 2.57E-17 - T[710-892] 2.38E-51 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[74-303] 5.0E-16 - T[706-896] 3.4E-51 |
| SMART |
VWF_A (IPR002035) - T[81-292] 4.7E-5 - T[714-890] 3.5E-43 |
| Pfam |
VWF_A (IPR002035) - T[83-262] 1.9E-11 - T[716-883] 6.1E-41 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[83-299] 16.61 - T[716-889] 28.075 |
| Pfam |
Collagen (IPR008160) - T[325-381] 5.4E-7 - T[405-462] 1.4E-7 - T[466-521] 4.7E-7 - T[524-580] 6.9E-8 - T[585-631] 8.7E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COCA1_HUMAN | 38.614 % | 144 | 6.07E-35 |
| COEA1_HUMAN | 43.784 % | 155 | 1.89E-38 |
| COOA1_HUMAN | 39.942 % | 146 | 1.27E-35 |