Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Harore.CG.MTP2014.S1...'
  2. Clone 'cicl043a21'
  3. Transcript 'KH2012:KH.L153.21.v2...'
  4. Transcript 'Boschl.CG.Botznik201...'
  5. Transcript 'KH2012:KH.C2.236.v3....'

Transcript Model

Transcript Id

KH2012:KH.C2.236.v3.R.ND1-3

Possible name(s)

COL14A1; COL24A1; COL6A2

Location

KhC2 [7,647,245 / 7,670,990]

Sequences

Amino acid sequence

Length: 941

>KH.C2.236.v3.R.ND1-3
FLHHKTSLTAMKVLCVAVALILLINTDASGKRHKMQTSVRNVQGDDPLLEVEPIPPDTML
GECSCKCCENTPAPIIQPKCANDIIMAVDSSACFRDHHAKMMRFLRKLVRRIGRTENIQY
GGTETRLGIMQFSSDILFPLHLNSFEDYTNPSTRRGLMSGIEQALSTLGFLGEGSFLNKA
LNATVDHFQSEPRPEELLTQISPQTPKPVVILMTNGKSHPSVTMDDIELSIAGLKAAGVT
VIPVSVTRECHGVQNDVWNEGLCPDTIILNKLAKVGRDETSTFFEMKSHDVLADVINELT
CYSHGPANLVAPCNNCTCSCELPIGPIGPDGPKGQKGEPIKGEQGPKGELGIPGIDGLDG
DKGEVGNKGDNGEKGDIGPKGVIGDIGAKGDKGEFGDKGDTGFKGEIGEKGDLGKKGIKG
TVGEKGDVGQKGNIGDKGEIGEDGPEGPKGTKGNQGDQGEKGVGEKGGKGETGPEGSKGD
TGNKGNTGNKGNKGMIGLCGKPGPAGKPGVEGVAGLDGLDGGPGQPGIQGPRGPRGDDGD
KGEPGPQGASGFPGQRGLAGERGPIGPQGLNGGKGEKGEPSSELGLPGLPGSSGLVGEPG
RDGADGLDGAQGVPGDRGPRGEPGPRGHPGTYDLDELRGVISEIVRELLPGDCAALDEEP
APPDVTTVVAPTTTSIATTTTVAPTTTTIKPTPTPTVPTAAPTSPSGIGCSNARVDLAFV
LDGSASVGEDGFVLLREFLINVVSAFTNIGNDGVQVAMIQYNDNPRMEFDFEQTVDKTSV
LDAIDGLVYMGGNTKTGLALTFLQSAYEDARPHSDKVAVVVTDGRSQDDVIIPSQQLKRE
GTTIFAIGVGEAERMELVEMASVPVDKFVFSVDDYTDIASIQENLIKQICGVTRGVFRSA
AGVDFTPEDDKLIPVVTTTSPILEEEYDGSGELEYEYEGSS

Nucleotide sequence

Length: 3,147

>KH2012:KH.C2.236.v3.R.ND1-3
TTTTAAGTAGGAATTTTAATTCTTGCATCATAAGACCTCATTAACAGCCATGAAGGTTCT
TTGCGTGGCAGTAGCGCTGATACTGCTGATAAACACCGATGCATCAGGAAAGCGTCACAA
GATGCAAACTAGCGTGAGAAACGTCCAGGGAGACGATCCGCTTCTGGAAGTTGAACCGAT
TCCCCCGGACACGATGCTCGGCGAATGCTCGTGCAAATGCTGTGAGAACACCCCAGCACC
TATCATCCAACCAAAATGTGCCAATGACATCATCATGGCTGTGGACAGCAGCGCTTGCTT
CCGTGACCACCACGCGAAGATGATGAGGTTCCTCCGGAAACTAGTAAGAAGGATCGGAAG
AACTGAAAACATTCAATACGGAGGAACAGAAACAAGGCTGGGAATAATGCAGTTCAGCAG
CGACATTCTCTTCCCTCTCCATCTTAACTCCTTCGAAGATTACACCAATCCATCAACACG
TAGGGGGTTAATGTCCGGTATTGAACAAGCCTTATCTACTCTCGGTTTCCTCGGTGAAGG
ATCTTTCCTTAACAAAGCCTTGAACGCGACCGTTGACCATTTCCAAAGCGAGCCACGCCC
GGAAGAACTTCTTACGCAGATTTCCCCACAAACCCCAAAGCCGGTCGTTATTTTAATGAC
GAATGGTAAAAGCCACCCAAGTGTGACTATGGATGACATTGAGCTCTCTATTGCTGGTTT
GAAAGCAGCTGGAGTCACAGTTATTCCAGTTTCCGTCACCCGGGAATGCCATGGAGTTCA
GAATGATGTTTGGAACGAGGGCTTGTGTCCTGATACAATCATTTTGAACAAGTTAGCCAA
AGTTGGAAGAGACGAAACCTCAACTTTCTTTGAGATGAAGTCTCATGACGTATTGGCTGA
CGTCATCAACGAGCTTACATGTTACTCCCATGGACCTGCAAACTTAGTAGCACCTTGCAA
TAACTGCACTTGCTCTTGCGAGCTTCCCATCGGACCCATTGGACCGGACGGACCGAAAGG
TCAGAAAGGAGAACCGATCAAGGGTGAGCAAGGACCAAAAGGAGAACTCGGAATCCCCGG
TATTGACGGCTTGGACGGCGACAAGGGAGAAGTGGGCAACAAGGGAGACAACGGAGAGAA
AGGAGATATTGGTCCTAAGGGAGTAATCGGAGACATTGGAGCAAAGGGCGACAAAGGCGA
ATTCGGCGACAAAGGTGACACTGGATTCAAAGGAGAAATCGGAGAAAAGGGAGACCTTGG
AAAAAAAGGAATAAAGGGTACCGTTGGTGAAAAAGGAGACGTCGGGCAGAAGGGGAATAT
TGGGGACAAGGGAGAAATCGGCGAAGACGGCCCAGAAGGTCCAAAGGGAACCAAGGGAAA
CCAGGGAGATCAGGGCGAAAAGGGAGTTGGCGAAAAGGGTGGCAAAGGCGAGACTGGCCC
AGAAGGTTCGAAAGGAGACACCGGTAATAAAGGAAACACAGGAAATAAGGGTAACAAGGG
TATGATTGGACTGTGTGGAAAGCCTGGACCTGCTGGAAAACCTGGTGTTGAAGGCGTCGC
TGGTTTGGACGGTCTGGATGGCGGACCCGGTCAACCAGGTATCCAAGGACCAAGGGGACC
TCGCGGAGACGATGGCGACAAGGGTGAACCAGGTCCACAGGGAGCATCTGGTTTCCCGGG
ACAACGTGGTTTAGCAGGAGAGAGAGGACCAATTGGACCACAGGGTTTGAACGGAGGCAA
AGGAGAGAAGGGCGAACCATCAAGTGAATTGGGACTCCCAGGGTTGCCCGGAAGTTCTGG
TCTAGTTGGTGAACCAGGTCGAGATGGTGCTGACGGATTGGACGGCGCACAAGGTGTACC
CGGTGATCGGGGACCAAGAGGGGAACCGGGACCTCGTGGCCACCCAGGGACTTATGATTT
AGACGAACTACGTGGAGTGATCAGCGAGATTGTAAGGGAATTGTTGCCCGGAGATTGCGC
TGCACTAGACGAGGAGCCCGCACCCCCGGATGTCACAACCGTTGTCGCACCTACCACAAC
TAGCATCGCCACGACCACAACAGTAGCGCCAACCACAACGACAATCAAACCAACCCCAAC
CCCCACAGTTCCAACTGCAGCCCCTACCAGCCCTTCCGGTATCGGGTGCTCCAACGCGCG
GGTTGACCTCGCTTTTGTGCTTGACGGAAGCGCTTCAGTGGGCGAAGATGGTTTCGTCCT
TCTAAGGGAGTTCCTCATAAACGTTGTCAGTGCTTTCACTAACATCGGTAACGACGGAGT
GCAGGTCGCTATGATTCAGTACAATGATAATCCAAGGATGGAATTTGACTTCGAGCAAAC
TGTGGATAAGACTAGCGTTCTGGACGCCATTGACGGTCTTGTATACATGGGCGGCAACAC
TAAGACGGGACTTGCTCTGACCTTCTTACAGAGCGCATATGAAGATGCTAGACCGCACTC
TGATAAGGTTGCTGTGGTTGTTACTGACGGAAGAAGTCAGGATGACGTAATAATACCATC
ACAACAGTTGAAACGAGAAGGAACTACGATATTCGCCATTGGCGTGGGTGAAGCCGAGAG
AATGGAACTCGTCGAAATGGCGTCTGTACCGGTTGACAAATTCGTCTTCTCGGTCGATGA
TTACACCGACATCGCCAGCATTCAAGAAAATTTGATTAAACAGATCTGCGGCGTTACTCG
TGGAGTGTTTAGATCCGCAGCGGGAGTGGATTTCACGCCAGAGGACGACAAACTGATTCC
AGTTGTTACCACTACGTCGCCAATATTAGAAGAAGAATACGATGGATCCGGCGAACTTGA
ATATGAATACGAAGGATCTTCCTAACTTTAGAGGCTTTCTTCTCACCTACGTCAGCATAT
ATTGCCGCATGATCTGGCATTGTTAATTCATTATCACCGCGCTGTACAGTTCCTATAGTG
GGGGTAAGATGGGAGATGTTTACGTTATCTTTTATCTTCCCATTTGAATTTGCAGAATTA
TATAACGGTATCCTCGTGACTTTTAAAAAACGTCGTTGATTGCTAGAACACGGTTAGGAA
ATTGTGACATTATGTGCCAACAGTATCCCATCTTACCCCACAGTACCCTACACAAAATGT
TGTTTTCAGCATATAAGCCGGATTTTA

InterProScan

SUPERFAMILY
vWFA_dom_sf (IPR036465) - T[68-297] 2.57E-17 - T[710-892] 2.38E-51
Gene3D
vWFA_dom_sf (IPR036465) - T[74-303] 5.0E-16 - T[706-896] 3.4E-51
SMART
VWF_A (IPR002035) - T[81-292] 4.7E-5 - T[714-890] 3.5E-43
Pfam
VWF_A (IPR002035) - T[83-262] 1.9E-11 - T[716-883] 6.1E-41
ProSiteProfiles
VWF_A (IPR002035) - T[83-299] 16.61 - T[716-889] 28.075
Pfam
Collagen (IPR008160) - T[325-381] 5.4E-7 - T[405-462] 1.4E-7 - T[466-521] 4.7E-7 - T[524-580] 6.9E-8 - T[585-631] 8.7E-8

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
COCA1_HUMAN 38.614 % 144 6.07E-35
COEA1_HUMAN 43.784 % 155 1.89E-38
COOA1_HUMAN 39.942 % 146 1.27E-35