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- Transcript 'KH2012:KH.C2.269.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.269.v1.A.SL2-1
Possible name(s)
CELF2; CELF3; CELF5
Gene model
Location
KhC2 [5,212,134 / 5,221,383]
Amino acid sequence
Length: 500
>KH.C2.269.v1.A.SL2-1
TRMNGNSAGPPAHGDQPDPDAIKMFIGQIPKTWVESEVREFLEGYGPIYQLNILREKGSV
MSKGCCFVTFYTRKAALAAQNELHNMKTLPGMHHCVQMKPADSENKSEDRKLFIGMISKK
MTEQDLRQLFCPFGNIEECRILMNPDGVSKGCAFVTYSKRVSAQNAIRNMHQSTTMEGCS
APIVVKIADSPKDKERKKTQSQLAMQLNQFSNQWKNLSGLAALAPVLQSLACNNQYNAPS
NQHNSGVFSTTQLQQALTIAAAAQTLLSNQPSSVSHNNSNSVPGSSGISSMTSQYGGNVC
ASPSGTSYRSHSHNSNMWAQQHSAPYPSAGMNNGMSSGCSSTSPLDPMTMNLAQQSGSNL
TLDLNHSPSSTATGINPTAHMLAALTSPTSMYNQSMMHPHNSSPAGSHKEGPEGSNLFIY
HLPTHFTDHDLMQTFFTFGTIVSAKVFIDKQTNLSKCFGFVSYDNPASAQHAIQAMHGFQ
IGMKRLKVQLKRPKGESKAY
Nucleotide sequence
Length: 2,791
>KH2012:KH.C2.269.v1.A.SL2-1
GTGGGCTGGGCAGTGACTTAAATAATACATAGGCTGTGCCAGTGTATGAATAGGCTACTG
CACCTAAACTTGATTGACCACCAACTAAACAAGAATGAACGGTAATTCAGCAGGTCCTCC
TGCTCACGGGGATCAGCCGGACCCAGATGCGATTAAGATGTTCATAGGTCAGATTCCCAA
AACATGGGTTGAATCTGAGGTGCGTGAGTTTCTCGAGGGTTATGGGCCAATCTACCAACT
TAATATTCTAAGAGAAAAGGGTAGTGTTATGAGCAAAGGCTGTTGCTTTGTTACATTCTA
CACTCGGAAGGCTGCACTTGCTGCACAAAATGAACTACATAATATGAAAACTTTGCCAGG
GATGCATCACTGTGTTCAAATGAAGCCGGCAGATTCAGAAAACAAAAGTGAGGATCGCAA
GCTCTTTATTGGGATGATTAGTAAAAAGATGACGGAGCAAGACCTTCGTCAATTGTTCTG
TCCATTTGGGAACATAGAGGAGTGTAGAATTCTTATGAATCCCGATGGTGTAAGCAAAGG
ATGTGCGTTTGTAACTTATTCGAAAAGAGTTTCAGCTCAAAATGCAATACGCAACATGCA
CCAGTCCACAACCATGGAGGGTTGCTCTGCGCCAATTGTAGTGAAGATAGCTGATTCACC
GAAGGATAAGGAAAGGAAGAAAACACAATCCCAGCTTGCCATGCAACTTAACCAGTTCTC
TAATCAGTGGAAGAATCTGTCTGGTTTAGCGGCATTAGCTCCGGTTCTTCAAAGCTTGGC
TTGCAACAACCAATACAATGCACCCAGCAACCAACACAACTCAGGTGTTTTTTCAACGAC
CCAGCTCCAACAAGCACTCACGATCGCTGCTGCTGCTCAGACACTCCTAAGCAACCAGCC
CTCAAGTGTCTCGCACAATAATTCCAACTCCGTGCCCGGAAGCAGTGGCATTTCGTCAAT
GACATCACAATACGGTGGGAACGTGTGTGCGAGTCCCAGTGGAACTAGCTACAGATCGCA
TAGTCATAATTCAAACATGTGGGCTCAACAACATTCAGCCCCATACCCAAGTGCTGGGAT
GAACAACGGGATGAGTTCTGGTTGCTCCTCCACAAGTCCTCTTGATCCGATGACGATGAA
CCTGGCTCAGCAAAGCGGGAGCAACCTCACGCTCGATCTCAACCATTCTCCTTCATCTAC
AGCAACAGGTATCAACCCAACAGCACACATGCTCGCTGCATTGACTTCACCAACTTCAAT
GTACAACCAATCAATGATGCATCCCCATAACTCCTCTCCAGCTGGAAGCCACAAAGAAGG
TCCTGAAGGTTCGAACTTGTTCATTTATCACTTGCCAACTCACTTCACGGACCATGACCT
GATGCAGACATTCTTTACATTCGGGACGATCGTATCGGCAAAAGTTTTTATTGATAAGCA
AACTAATCTCAGCAAGTGCTTTGGATTTGTGAGTTACGATAACCCGGCGTCGGCTCAGCA
CGCAATCCAGGCCATGCACGGTTTCCAGATCGGAATGAAGAGACTTAAAGTTCAGCTGAA
GCGTCCCAAGGGCGAGAGCAAAGCATATTAGAAGTAACCTAGGTCTGCTAAAGATGTTGT
GTATATTTTTCATTAGTTTGGGATTATTTTGCACACGCCCCCTCCACCCTACGATGTTCC
AGTGTTAGTCGTTTTTGTTCAAGTGGCTGCTTCTTGCTGGAAGACCTTTCCGGAATGTGT
TGTGTTCCGTCCCACTGTTGTCTGGTGTCCTTTGCCAGTGTTACTCGCTACAATATGCGT
TAAGCCGGCTCTGTGTCGTTCTGCAAGGGGCTGCTGATGTAATTTGAGTGTTTCATGTCA
CACGGGATGCAATAGATCTACTTTGGTGCTCTGGATTTGCGCTGCTTAAAATTCGATGTG
AAATTTTATGGAATTCGTCTTCACTCAGTGTTAGATCTTACCGTTTAATTTTATCCAAAT
ATTTATTTTCGTCAAGTTTTTACGTCTTTTAAACCCGGCCATTCTCACCGTCCAAGTTTG
TTTAATAATTCAAATCTCTTGCGCTCCCAATTGACTGACGTCAGAAAACGCTGACTCAGC
AGAAATGTTGCATGCAAAACGTTGCCTACCTAGATTAGTTATATATTCTATCTATTTATG
TCCAGTTTTTAAGTTTCATACGTTTTTGCGTTGTTTTTCTTTTGTTTTAACCTCACCCTC
GAGAGAGAGATTGACGTCGCTTTTAAAGTCAATGACCCGTGGAGTGACGTCACACTGTAA
GAGATTCGCTTTAGACAATTCGACCGCGTATTTATTTTTACGTTTTGTTTTATTTAACAA
ATAGTTTTATTTAGTTATTGATTCTGTTTTTTCTTCTTATGGTTTGATTTCAAAATAGTC
GAGTGACGTATAGGACCAGCGGAAAAGGTTTCTCTTATTACGTCACTATCTATATTGTTT
TGTGCTGTTAGGTGTTGTGTTTTTGTGTGCAAGGAAATTTGGTCCAGACCAGAAAGAAGT
GTTTAAGCGTGACTTGTTATATATGATCTGTACGTACCCAGTTCGTAAGTTATATTAGTT
TTAAGCATTGTTTGCATTTTAATATATATTTGGTTGCCCGGTTTTACTTGTTATATTATT
TTATTGTTGACGACGTATTACGTTTTCTCGTTCTTTCACGTTTTTTGAGATGTATACTAT
ATTTATGGTTCTTACGTCTATTACTCGTTTTGTACCGTGTCTGGTAACAGTGTAATTTTC
TTGGAAATAAAACCCGTTAAGATTAACAAGA
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[4-91] 6.85E-17 - T[108-200] 3.53E-45 - T[412-496] 3.53E-45 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[12-105] 3.9E-19 - T[106-199] 8.2E-29 - T[379-492] 4.4E-28 |
| CDD |
CELF1/2_RRM1 (IPR034196) - T[21-102] 1.11118E-50 |
| PRINTS |
Hud_Sxl_RNA (IPR002343) - T[22-37] 1.0E-5 - T[115-130] 1.0E-5 - T[130-142] 1.0E-5 - T[171-188] 1.0E-5 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[22-103] 11.895 - T[110-190] 15.647 - T[415-493] 16.313 |
| SMART |
RRM_dom (IPR000504) - T[23-99] 2.6E-13 - T[111-186] 2.1E-23 - T[416-489] 4.0E-22 |
| Pfam |
RRM_dom (IPR000504) - T[25-91] 3.0E-9 - T[112-176] 4.0E-16 - T[417-487] 7.5E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CELF2_HUMAN | 51.6 % | 454 | 2.52E-156 |
| CELF5_HUMAN | 39.726 % | 320 | 1.5E-104 |
| CELF3_HUMAN | 38.755 % | 338 | 7.61E-112 |