Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.28.v2.A.ND4-1

Possible name(s)

RPL10A; RSL1D1

Gene model

KH2012:KH.C2.28

Location

KhC2 [7,439,289 / 7,443,249]

Sequences

Amino acid sequence

Length: 236

>KH.C2.28.v2.A.ND4-1
QKQRHAGKFIVRSFSSESSKMSKVSRDTLYECVENILKGSKTKQRKFLESVELQISLKNY
DPQKDKRFSGTVKLPNLPRNKFRICVLGDAQHCDEANANNIACMNVESLKKLNKDKKLIK
KLAKKYDAFLASESLIKQIPRLLGPGLNKAGKFPSLVTHQESLASKIHDVKSTIKFQMKK
VLCLAVAIGNVNMTEDELVQNLNLAINFLVSLLKKNWQNVRSLYVKSTMGRPQRLY

Nucleotide sequence

Length: 1,156

>KH2012:KH.C2.28.v2.A.ND4-1
TAGCTTCTCTCGTTCGCCAAACAGTCGAGAAAAAGTGGATCGGCTAGACAGGAGACAGCA
GACAAAACGACTTTCTCGTTAAGCTCGGAATTAGGTAACAGCTATAATCAACAAATTCTG
AACCCAAATGTGAAAGTGCTTCAAAATAAGATATTTTTAAATGAAATGCATTTTCTCTTT
AAACAGCACAATCATGTTGTTCTAAAATAACACAAAAAATTTCAAAATTGCGCAATTAAA
ATTATACTTTGTTTATTTATACAACAATTTGTTTTGTAGAATATATTTCCTATCTTGAAG
CAACTTTTAACATTTTGTACGCTGATATAAAAACTCCATCCGGGCATAGATTAGACATCT
TACCGAGCGCATTCGTCCCCTTTCTTTTGAATGATATAGGATCTCTATGACAAAAGCAAC
GTCACGCTGGAAAATTTATTGTTCGTTCCTTTTCGTCAGAATCTTCCAAGATGAGTAAGG
TATCACGTGATACACTCTACGAGTGCGTAGAAAACATCCTTAAAGGTTCAAAAACCAAAC
AGAGGAAGTTTCTTGAATCTGTGGAGCTTCAAATCTCCTTGAAGAACTACGATCCACAGA
AGGACAAGCGTTTCTCTGGAACAGTCAAGTTGCCAAACTTGCCACGAAATAAGTTCCGCA
TCTGTGTGTTGGGAGATGCTCAACATTGTGATGAAGCAAACGCAAACAACATCGCTTGCA
TGAATGTAGAGTCGTTGAAGAAGCTCAACAAGGATAAGAAACTCATCAAAAAGCTCGCAA
AGAAATATGATGCTTTCCTTGCTTCTGAATCGCTCATTAAACAAATTCCAAGATTGCTTG
GACCTGGTCTCAACAAAGCAGGAAAGTTTCCCTCCCTTGTGACACACCAGGAATCTTTGG
CATCGAAGATCCATGATGTGAAATCCACCATCAAGTTCCAGATGAAGAAAGTTCTTTGTT
TAGCTGTTGCCATCGGTAACGTGAACATGACGGAAGATGAACTTGTTCAAAACTTGAATC
TCGCCATTAACTTCTTGGTCTCCCTGCTAAAGAAGAACTGGCAAAACGTTCGTTCCCTGT
ACGTGAAAAGCACAATGGGACGTCCACAACGCTTGTACTAATTGCAAGCAACAATAAATT
TGCTGATTACTATTTT

InterProScan

PIRSF	Ribosomal_L1 (IPR002143) - T[12-236] 2.0E-52
SUPERFAMILY	Ribosomal_L1-like (IPR023674) - T[22-236] 1.1E-69
CDD	Ribosomal_L1/biogenesis (IPR028364) - T[29-235] 1.42592E-64
Pfam	Ribosomal_L1/biogenesis (IPR028364) - T[41-230] 3.1E-46
Gene3D	Ribosomal_L1_3-a/b-sand (IPR016095) - T[82-172] 6.1E-69
ProSitePatterns	Ribosomal_L1_CS (IPR023673) - T[136-155] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL10A_HUMAN	77.209 %	321	1.68E-112