Aniseed - Transcript Card

Transcript Model

Transcript Id

KH2012:KH.C2.28.v2.A.nonSL6-1

Possible name(s)

RPL10A; RSL1D1

Gene model

KH2012:KH.C2.28

Location

KhC2 [7,439,736 / 7,443,249]

Sequences

Amino acid sequence

Length: 223

>KH.C2.28.v2.A.nonSL6-1
FSSESSKMSKVSRDTLYECVENILKGSKTKQRKFLESVELQISLKNYDPQKDKRFSGTVK
LPNLPRNKFRICVLGDAQHCDEANANNIACMNVESLKKLNKDKKLIKKLAKKYDAFLASE
SLIKQIPRLLGPGLNKAGKFPSLVTHQESLASKIHDVKSTIKFQMKKVLCLAVAIGNVNM
TEDELVQNLNLAINFLVSLLKKNWQNVRSLYVKSTMGRPQRLY

Nucleotide sequence

Length: 709

>KH2012:KH.C2.28.v2.A.nonSL6-1
CCTTTTCGTCAGAATCTTCCAAGATGAGTAAGGTATCACGTGATACACTCTACGAGTGCG
TAGAAAACATCCTTAAAGGTTCAAAAACCAAACAGAGGAAGTTTCTTGAATCTGTGGAGC
TTCAAATCTCCTTGAAGAACTACGATCCACAGAAGGACAAGCGTTTCTCTGGAACAGTCA
AGTTGCCAAACTTGCCACGAAATAAGTTCCGCATCTGTGTGTTGGGAGATGCTCAACATT
GTGATGAAGCAAACGCAAACAACATCGCTTGCATGAATGTAGAGTCGTTGAAGAAGCTCA
ACAAGGATAAGAAACTCATCAAAAAGCTCGCAAAGAAATATGATGCTTTCCTTGCTTCTG
AATCGCTCATTAAACAAATTCCAAGATTGCTTGGACCTGGTCTCAACAAAGCAGGAAAGT
TTCCCTCCCTTGTGACACACCAGGAATCTTTGGCATCGAAGATCCATGATGTGAAATCCA
CCATCAAGTTCCAGATGAAGAAAGTTCTTTGTTTAGCTGTTGCCATCGGTAACGTGAACA
TGACGGAAGATGAACTTGTTCAAAACTTGAATCTCGCCATTAACTTCTTGGTCTCCCTGC
TAAAGAAGAACTGGCAAAACGTTCGTTCCCTGTACGTGAAAAGCACAATGGGACGTCCAC
AACGCTTGTACTAATTGCAAGCAACAATAAATTTGCTGATTACTATTTT

InterProScan

PIRSF	Ribosomal_L1 (IPR002143) - T[3-223] 2.1E-52
SUPERFAMILY	Ribosomal_L1-like (IPR023674) - T[9-223] 8.76E-70
CDD	Ribosomal_L1/biogenesis (IPR028364) - T[16-222] 6.77441E-65
Pfam	Ribosomal_L1/biogenesis (IPR028364) - T[28-217] 2.6E-46
Gene3D	Ribosomal_L1_3-a/b-sand (IPR016095) - T[69-159] 5.0E-69
ProSitePatterns	Ribosomal_L1_CS (IPR023673) - T[123-142] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL10A_HUMAN	77.209 %	321	1.18E-112