- Transcript 'Cisavi.CG.ENS81.R15....' >
- Clone 'cien60702' >
- Transcript 'KH2012:KH.C2.346.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.346.v1.A.SL1-1
Possible name(s)
HMCN1; SPON1; SPON2
Gene model
Location
KhC2 [4,715,096 / 4,722,130]
Amino acid sequence
Length: 965
>KH.C2.346.v1.A.SL1-1
YLKVIQNKPAMVVGNCMTSCLSWTKCKNFYSGQMGPLTSFKLRILLCSFLFLQLAESGRR
VANPARQQSGCPTDISQRYFSRPRPRRGDNGFQVRIEGDPEDYEPEREYVVTIQSTNPAS
FRGFMLTAKHASNDEPAGTFTPINSYTSRVLRSCPSYATQVTNGKKKRVSVRWTAPARGF
GCVVLAASVVQKGWIWFRHEGRLSLNICEREALPPSNATTDCCACGNATYHMTFYGLWSP
TSHPKDYPAFSTHWSNVIGASHSSEYSIWDYGEFASPAVQKVAEWGWPNDVETEVTSQGD
HVMSLIKTPAQWPAYQPRNLRNPPSDTFQVDQSRHLVSLLSMLGPSPDWNVGITKETMCT
LECGWIGTRVYNLTPWDAGTDSGVSYLSANSATTPHERIRALTSADDPESPFYKEGGGNI
EPVARVVITRTSLSVSEAFYIVLYRNLGEPVLKQYSVTSQSTTSDVTMCSYGQWSDWSEC
AVTCGWGIKTRSRSGGFRKSPSECGATMEKEICQGSGECAGGAGDSTVCLYSDWISWGDC
SVSCGAGLKVRNRVLMWPSEASNCREPLKEMTECAASCGPGDACNYSTWGDWMPCPVTCG
VGQTIRKRYCSAVMQNSKCMTSMSCDQVTVDVVGCVYAEWSDWSACPVTCGIGQTFRKRM
LLSGESTCEGFQMQQSKCMTSMTCPSDDQSACEYGEWSEWMPCSESCGKGATLRKRFLLG
EDSSSNQCEGFVMENAACHNRPCSNESNHQQCVFLSWNPWMPCSVSCETLRKRFLNQSAS
VDGCERFQMEQNRCMVPCDVTSATTCLYSEWSPWVPCVGGRLTGQTTRKKVLKFAPEGLS
CETFMMETAACIPVPVTAEGQNQCSSTEWSEWSTCCRRERETRKRLQSSPNSGCVHLVKR
RRCQNTEPCPRDCVMGPWSRWSRCSVRKGRKVAIQIRKRRIRVRPLSAGAPCSRRKEKRR
CNRNG
Nucleotide sequence
Length: 3,259
>KH2012:KH.C2.346.v1.A.SL1-1
ATATGCCATAAGACATTGTTTGACTTAAACACGTTTTATTAAAGGGCAGTTGAATATTTT
ACAAATGCTTTCGCTATAGTAATGTATCTTGGACTTAGTATTTAAAAGTCATACAAAACA
AACCAGCAATGGTGGTTGGTAATTGCATGACAAGCTGCTTAAGTTGGACAAAATGCAAGA
ACTTCTATAGCGGACAAATGGGTCCTTTAACAAGTTTCAAACTTAGGATATTACTTTGTT
CGTTCCTGTTCCTTCAACTTGCGGAATCTGGTCGCCGGGTTGCGAATCCTGCCCGACAGC
AATCTGGTTGTCCGACGGACATTTCACAACGTTATTTTTCACGTCCACGTCCAAGGAGAG
GCGACAATGGATTTCAAGTTCGAATTGAGGGAGATCCAGAAGATTACGAACCCGAGAGAG
AATACGTTGTGACCATTCAAAGTACAAACCCTGCTTCGTTTCGTGGATTTATGCTCACAG
CAAAGCATGCAAGCAATGACGAACCAGCTGGCACTTTTACGCCAATAAACTCTTACACGT
CCCGTGTGTTGAGGTCTTGTCCCAGCTATGCCACCCAAGTTACCAACGGCAAGAAGAAAC
GTGTCTCTGTAAGATGGACAGCCCCTGCTAGAGGATTTGGTTGCGTGGTGCTGGCGGCAA
GTGTTGTACAAAAAGGTTGGATATGGTTTCGCCACGAAGGAAGACTGTCACTAAATATTT
GTGAAAGAGAAGCCTTGCCTCCATCAAATGCAACCACGGATTGTTGCGCTTGTGGAAATG
CTACTTACCATATGACGTTTTATGGACTGTGGTCGCCGACCAGTCATCCGAAAGATTATC
CTGCGTTTTCTACGCACTGGTCAAACGTAATCGGAGCGTCGCACAGCAGTGAATACTCGA
TCTGGGATTATGGAGAATTTGCGAGTCCAGCTGTACAGAAAGTCGCGGAATGGGGTTGGC
CCAATGACGTCGAAACCGAGGTGACGTCACAAGGAGATCACGTGATGTCTCTAATCAAAA
CTCCAGCGCAATGGCCAGCCTACCAACCGCGCAACTTGAGGAATCCTCCATCTGACACGT
TTCAAGTTGATCAATCCCGCCACCTGGTGTCGTTGTTGAGCATGCTTGGTCCAAGTCCTG
ATTGGAATGTTGGAATAACAAAAGAGACGATGTGCACGTTAGAGTGTGGTTGGATTGGCA
CAAGGGTGTACAATTTAACGCCGTGGGACGCCGGTACAGACAGTGGGGTATCATACCTGT
CTGCGAACTCAGCCACAACCCCACATGAGAGAATACGGGCCTTAACATCTGCCGACGACC
CGGAATCGCCGTTTTATAAAGAAGGGGGTGGCAACATTGAACCCGTGGCAAGAGTTGTTA
TAACTCGCACAAGTTTATCTGTAAGTGAAGCTTTTTATATTGTGTTATATAGAAATTTGG
GTGAACCTGTTCTCAAGCAGTATTCAGTCACGTCACAATCAACCACAAGTGACGTCACAA
TGTGTTCCTATGGCCAGTGGAGCGATTGGTCGGAATGTGCTGTGACGTGCGGTTGGGGGA
TCAAGACCCGAAGCAGGTCCGGAGGTTTTCGGAAATCGCCAAGCGAATGTGGGGCAACGA
TGGAGAAGGAAATTTGCCAAGGAAGCGGAGAATGCGCTGGAGGTGCTGGAGATTCTACTG
TGTGTCTGTATTCAGATTGGATTTCATGGGGAGATTGTAGTGTAAGCTGCGGTGCGGGGT
TAAAGGTTCGAAATCGTGTTCTGATGTGGCCGTCGGAAGCCTCCAATTGCAGGGAGCCGT
TGAAAGAAATGACAGAGTGTGCTGCTTCTTGTGGTCCGGGAGATGCGTGCAATTACTCGA
CGTGGGGGGATTGGATGCCATGCCCGGTGACGTGTGGGGTTGGGCAAACCATCAGGAAAA
GGTATTGTAGTGCAGTCATGCAGAACAGCAAATGCATGACGTCAATGTCATGTGACCAAG
TCACAGTTGATGTTGTCGGCTGTGTATATGCGGAGTGGTCTGATTGGTCAGCGTGTCCAG
TCACGTGCGGTATTGGACAAACGTTTCGTAAGCGGATGTTACTCAGTGGGGAATCGACCT
GCGAAGGTTTTCAAATGCAGCAAAGCAAGTGTATGACGTCAATGACATGCCCGAGTGACG
ACCAATCAGCATGCGAGTACGGAGAATGGTCGGAATGGATGCCTTGCTCAGAAAGTTGTG
GAAAAGGAGCAACTTTGAGGAAGAGGTTTCTTCTGGGTGAAGATTCTTCTAGTAATCAGT
GCGAGGGTTTCGTCATGGAAAACGCGGCTTGTCATAACCGACCTTGCTCTAATGAGTCAA
ACCACCAGCAATGTGTCTTTCTATCTTGGAACCCATGGATGCCATGCTCGGTTTCTTGCG
AAACTCTTAGAAAACGTTTCCTCAACCAATCAGCGAGTGTGGACGGCTGCGAAAGATTTC
AAATGGAGCAAAATCGTTGCATGGTACCGTGTGACGTCACAAGTGCAACAACATGCTTGT
ACTCCGAATGGTCCCCATGGGTTCCATGCGTAGGAGGTCGACTGACTGGACAAACTACTA
GAAAAAAAGTCCTAAAATTTGCCCCTGAGGGACTGTCCTGTGAAACGTTTATGATGGAAA
CAGCGGCATGCATCCCTGTTCCTGTGACTGCTGAAGGGCAAAACCAATGCTCATCAACTG
AGTGGTCCGAGTGGTCGACATGCTGCAGACGAGAGCGGGAAACTAGAAAGCGACTACAGA
GTTCGCCGAACTCGGGTTGTGTGCATTTGGTAAAACGACGACGTTGCCAAAATACTGAAC
CATGTCCCCGTGACTGTGTAATGGGACCTTGGAGTCGGTGGAGCCGTTGTAGCGTCCGGA
AAGGAAGAAAAGTCGCCATCCAGATCCGGAAGAGACGAATTCGTGTTCGACCTTTGTCTG
CAGGTGCTCCTTGTTCAAGGAGAAAAGAAAAAAGGAGATGCAACAGAAACGGCTGAAGTT
GATAAACGTTCACATAACCCATCCATGTTCATAACCATCAGACCTATATTGGGCAAACTG
GTGGTGCATATAACAAAGTACAGCGTTAACCAGATGCATAGAATTATTAATGCATCCCGT
TTATGCAGTCTAAAGTGTTGTTTTCGTGCCACTTATTTTGTTATGTTGATTTGCCTTTCT
GTGTTAAGTACATCGCGACGATTTTGATTCAGTTTGTTGGATTTTTTCTGTGCAGTGTTT
ATTACCAAATTCAATACAC
| ProSiteProfiles |
Reeler_dom (IPR002861) - T[49-221] 25.628 |
| CDD |
Reeler_dom (IPR002861) - T[85-208] 3.8033E-26 |
| Pfam |
Reeler_dom (IPR002861) - T[92-197] 1.1E-18 |
| Gene3D |
Spondin_N_sf (IPR038678) - T[213-402] 6.2E-64 |
| ProSiteProfiles |
Spondin_N (IPR009465) - T[218-411] 69.908 |
| Pfam |
Spondin_N (IPR009465) - T[228-422] 9.7E-66 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[451-523] 1.0E-7 - T[526-580] 4.8E-10 - T[582-629] 5.4E-7 - T[632-685] 3.8E-9 - T[689-743] 9.5E-9 - T[910-961] 8.2E-8 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[468-520] 9.483 - T[528-579] 10.192 - T[583-626] 8.898 - T[634-685] 10.322 - T[691-744] 10.391 - T[863-910] 8.142 - T[912-965] 8.496 |
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[469-513] 2.35E-6 - T[529-575] 2.75E-7 - T[584-620] 1.7E-6 - T[633-679] 1.09E-8 - T[691-743] 3.79E-8 - T[908-963] 9.16E-6 |
| SMART |
TSP1_rpt (IPR000884) - T[471-520] 6.8E-5 - T[531-579] 4.3E-4 - T[586-626] 0.085 - T[637-685] 2.8E-7 - T[694-744] 9.1E-6 - T[754-799] 0.26 - T[808-858] 2.3 - T[866-910] 5.3 - T[915-965] 0.052 |
| Pfam |
TSP1_rpt (IPR000884) - T[473-519] 6.9E-6 - T[532-576] 1.1E-7 - T[587-621] 3.9E-7 - T[639-684] 3.1E-7 - T[695-743] 2.5E-10 - T[916-962] 0.024 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 28.747 % | 89.4 | 8.75E-18 |
| SPON1_HUMAN | 40.854 % | 485 | 3.12E-158 |
| SPON2_HUMAN | 32.781 % | 125 | 2.97E-31 |