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- Transcript 'KH2012:KH.C2.380.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.380.v1.A.SL2-1
Possible name(s)
LARP4; LARP6; LARP7
Gene model
Location
KhC2 [22,822 / 26,783]
Amino acid sequence
Length: 588
>KH.C2.380.v1.A.SL2-1
AVDKSSTKYRAVAKFEMLEPTEPTKACSTAVKGDTGIYDCEKIGEKFTDATTPVVTNDCR
KSGKTTTGYRERIAMNYKDRRSTCKHTTPISLQKRNREFKLQPPFLQPVVQPQPNYMQSG
RILPSFHLVNKHLNQCEHGLPCSYSPNIGHPIQHSPNFGLVTATEVYGTTFYRYERPVFE
GPFPNGFPIIEDLSPAHIHHHCGGNHPHTRPATSIMHPQDSFTPPQSRNSLSSATPNPSS
LSSSSRSSSPFLHSHSDSTRDSGIISTESADEDVPFVLMERRRDIAFEKLLQKIIAIVED
TLSNEKLTKDLYVLRQMRRNSQGYVSLKLVASVKAIKKLTSDYDTVVLALRKSNKLEVNK
SATKVRRKDALPAKSVATSKEPSSLVVVGLPEVEATIESVISKYKEFGTIAQVRILSPKR
PIPAYLQGYVAALPYLGQMWCAIVEYEKPSCTMAAYRELSKRIDELPVTIIGPGFKKNVT
KKFKMYSLLKKEEKTKVVRHNSGDSIDSGADCDSEIFSSGSITSEDGKDDQSMSRCVSEL
LVVAAGFCGEKDKQYEVEDSSLARNLSNLCLKSDISGQTSNNVGVSVT
Nucleotide sequence
Length: 2,697
>KH2012:KH.C2.380.v1.A.SL2-1
GCTGTTGATAAAAGTTCCACTAAATATAGAGCTGTTGCAAAATTTGAAATGTTGGAGCCC
ACTGAGCCAACAAAAGCTTGCTCGACGGCGGTTAAAGGAGACACCGGGATTTATGACTGT
GAGAAAATAGGCGAGAAATTCACCGACGCAACCACGCCTGTCGTAACAAATGATTGTCGA
AAGAGCGGCAAGACAACGACTGGTTACCGCGAGAGAATAGCTATGAATTATAAAGATAGG
CGGAGTACTTGCAAACATACAACGCCCATCAGCTTGCAAAAAAGAAATCGTGAATTTAAG
TTGCAGCCGCCTTTTCTTCAACCTGTGGTTCAACCTCAACCAAACTACATGCAAAGTGGT
CGAATATTACCGAGTTTTCATCTGGTGAACAAACATCTTAACCAGTGCGAACACGGCCTA
CCTTGCTCATATAGTCCTAACATCGGTCACCCAATTCAACATTCCCCGAACTTCGGGCTT
GTAACAGCCACCGAAGTATATGGCACTACATTCTACAGATATGAACGACCAGTATTCGAA
GGACCATTTCCTAATGGTTTTCCAATCATAGAAGATCTATCACCTGCACATATTCACCAT
CACTGTGGTGGTAATCATCCGCATACACGCCCAGCAACATCAATCATGCACCCTCAAGAC
TCGTTTACCCCTCCTCAATCCCGCAACTCCTTGTCTTCCGCGACTCCAAACCCAAGCTCT
CTCTCATCTTCATCCAGATCATCTTCTCCCTTCCTCCATTCACACTCCGACTCCACGAGG
GACTCCGGAATCATTTCAACTGAATCAGCAGATGAAGATGTTCCGTTTGTGCTAATGGAA
CGAAGAAGAGATATTGCGTTTGAAAAATTACTTCAGAAAATTATAGCCATCGTAGAGGAT
ACGTTATCGAATGAAAAATTGACGAAAGATCTCTACGTGCTTCGGCAGATGCGTCGAAAC
TCGCAGGGTTACGTCAGCTTGAAGCTTGTTGCCAGCGTTAAAGCGATAAAGAAGTTAACC
AGTGATTACGACACCGTGGTTCTAGCTCTTCGCAAATCCAACAAGTTGGAAGTGAACAAG
TCGGCAACAAAAGTTCGTCGAAAAGACGCACTACCGGCGAAATCTGTAGCAACAAGTAAG
GAACCTTCATCGTTGGTGGTGGTTGGTCTACCAGAAGTTGAAGCTACAATAGAGTCGGTA
ATAAGCAAGTACAAAGAGTTTGGTACAATCGCCCAAGTGAGAATACTTTCTCCTAAACGC
CCAATACCAGCATACCTGCAAGGTTACGTTGCCGCCCTCCCGTATTTGGGTCAGATGTGG
TGTGCCATAGTTGAATACGAAAAGCCATCATGCACGATGGCAGCCTACCGAGAACTTTCC
AAAAGGATTGACGAATTGCCTGTTACAATTATAGGACCAGGATTCAAAAAGAATGTTACG
AAAAAATTCAAAATGTATTCTCTGTTAAAAAAAGAAGAAAAAACAAAAGTTGTCAGACAT
AATTCTGGAGATTCAATTGATTCTGGTGCAGATTGTGATAGCGAGATATTCTCGAGTGGT
TCAATCACTTCAGAAGACGGGAAAGATGATCAGAGCATGAGTCGTTGCGTTAGTGAACTA
TTGGTTGTTGCTGCTGGGTTCTGTGGCGAAAAAGACAAACAGTATGAAGTTGAAGATTCT
TCCCTTGCCAGGAATTTATCGAATCTTTGCCTGAAATCTGACATATCAGGACAAACTTCT
AACAATGTTGGTGTTAGTGTAACTTAAGTATTTCTCCAAACTGTTGCATAAAATGAGTGA
AAGTCGTCACAGTAAGAGGGGGCACTCAGTGAAGAATATGCCCATCAAATTATGAGGCAC
GAGATATAGTAACAAAGTCAAGAAGTTGATGTTATCTGGGTTGGATTTACATTCAATTTA
TGGTTAAATGTTTTACAACTCAATGAAGCGATTTAACAAACTAACGTAACAAACGTATCA
TGCAGATGCTGGTATAAGAGACAATACTTGTTAAACAAGACGTGATGAATCGTTTAAGGT
GAATTGGGTGCAGAACAAAAGGTTCAACTTAAGCTACGAGACTGATATCTTTGAAGTATT
TTTCCTTTGCACATTTTTACAAAAATTAAAATTGTTTTACCTTCAGTCAAAAACGTGCAC
CATAAACTTTGTTTTAGAACTAAATGTAGTTTCTTGACGTCAACACTTTTGTTTCATTGT
TGTTAATCTTTCTAAACCATAATAGAACATTCAACTGCACAGTCGTGTGTAGTTTGTGGC
AGACACAAAACAAACGATATTTACACCAAGTCAGCTTTAACGTGTTCTAAAATGTATCAC
TTACAATAACTGAATACCTCTGTCTTGCGTTACTTGATTTTAGAAGGTTTGAGGCCCTCG
CCTATGATTTGCTGGTCCGGTATGTTAAACCGACAGCGTATAGTAAATAGTAGGAACATT
TCGAATACACACCTGCTGCCTATTTACCATTACGATACCTCATACATACATAGGAGCTGC
ATGGCCCTCAATTTTCCACATTACTATTTTGAATGCCCATTTCATCACACAGTTCAACCG
CGATCAGTGTTTTGCGTGCCAATACCTGCGTATATACGTTGTATCGTATTAATTAGTGTG
ACTTCTTGTATGTTTGAGTGCTTCCTAGGAAAATTTAATAAAAGCGAAAGAGAAAGT
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[279-377] 7.7E-20 |
| ProSiteProfiles |
La_HTH (IPR006630) - T[284-375] 19.26 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[287-371] 1.81E-15 |
| SMART |
La_HTH (IPR006630) - T[288-368] 6.9E-16 |
| Pfam |
La_HTH (IPR006630) - T[298-352] 1.7E-11 |
| CDD |
LARP6_RRM (IPR034880) - T[383-472] 1.35865E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LARP6_HUMAN | 31.507 % | 99.8 | 3.96E-22 |