- Clone 'cilv060b21' >
- Clone 'cilv051i17' >
- Region 'REG00000594' >
- Clone 'cien211843' >
- Transcript 'KH2012:KH.C2.42.v1.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.42.v1.A.SL1-1
Possible name(s)
POU4F1; POU4F2; POU4F3
Gene model
Location
KhC2 [2,301,663 / 2,304,442]
Amino acid sequence
Length: 390
>KH.C2.42.v1.A.SL1-1
YDMFTNMLAPHHHHRPPSPPTTMTPLNTSYGEQKYAPLHNAADAVRRHCMASPVAYSGNL
FAGFDESFLARQAEALAAVEYPGKSQFKPEPTNHSYYPPAPHYVTQQHTTSAVPPPVYSS
MHPPPAFHHSAALQTSLDSSDVIDQLGSSHCGLPTYQPPTFNSSVMMTSDVTSQPHYITH
PAPTYNPPNHFHPTSSAMHSTVSVTPISAPIITQAGSPPPSVPSFTSNEYDADPRELEAF
AERFKQRRIKLGVTQNDVGQALANLKLPGVGSLSQSTICRFESLTLSHNNMVALKPILIT
WLEKAEEEHRRKMENAAMGEKKRKRTSIAAPEKRSLEAYFAVQPRPSSEKIAAIAEKLDL
KKNVVRVWFCNQRQKQKRMKFSAFNGDVIM
Nucleotide sequence
Length: 1,581
>KH2012:KH.C2.42.v1.A.SL1-1
GCAAAAGCTGTATACAGACTTATTGTATATTTTTTGATACGATATGTTTACTAACATGCT
TGCTCCACACCATCACCACCGCCCTCCTTCACCACCTACTACAATGACACCACTCAATAC
AAGTTACGGTGAACAGAAATACGCCCCGCTTCATAACGCTGCAGATGCCGTCCGTCGACA
CTGCATGGCATCGCCAGTGGCATATTCCGGCAATCTGTTTGCTGGATTCGATGAGAGTTT
TCTTGCTCGCCAGGCCGAAGCGTTGGCCGCTGTAGAATATCCCGGAAAAAGTCAGTTTAA
ACCCGAACCGACCAACCACAGTTATTACCCCCCAGCCCCCCACTACGTTACGCAACAACA
CACAACATCAGCCGTACCACCACCAGTTTACAGTTCAATGCACCCTCCACCCGCTTTCCA
CCACTCAGCGGCGCTGCAAACAAGTCTTGACAGCAGTGACGTCATCGACCAACTTGGGTC
TTCTCACTGTGGCCTTCCAACTTATCAACCGCCAACATTTAACTCGTCGGTGATGATGAC
GTCAGACGTGACGTCACAGCCCCATTACATCACCCACCCCGCCCCAACCTACAACCCCCC
GAATCATTTCCATCCTACGTCATCAGCAATGCACTCGACTGTATCAGTCACGCCCATCTC
TGCACCAATCATCACCCAAGCCGGCTCCCCTCCGCCAAGCGTGCCAAGTTTTACCTCCAA
CGAGTACGACGCCGATCCCCGTGAACTAGAAGCCTTCGCAGAAAGATTCAAGCAGCGACG
CATTAAACTTGGAGTGACGCAGAATGATGTTGGGCAAGCTCTTGCCAACCTCAAGCTACC
GGGTGTTGGATCGCTGAGCCAAAGCACAATTTGCAGGTTTGAGTCCTTGACACTCAGTCA
CAACAACATGGTCGCCTTGAAACCAATCTTGATCACGTGGTTAGAAAAAGCGGAGGAAGA
GCACAGGAGGAAGATGGAGAATGCTGCTATGGGAGAAAAGAAGAGAAAAAGAACTTCCAT
CGCTGCTCCGGAGAAACGTTCGTTGGAGGCTTACTTCGCCGTGCAGCCCCGACCTTCGTC
TGAGAAAATCGCTGCAATCGCGGAAAAGCTCGACTTAAAGAAAAACGTCGTGCGTGTGTG
GTTTTGCAATCAAAGGCAGAAACAAAAGAGAATGAAATTTTCAGCATTTAATGGGGACGT
GATTATGTAGAATATGCTGTGACCTCTTCAATGCATTCGACAGCACAATTGCTTTGCACC
ATCCCATAAAACGTACTGCACCTTCAACACTGCCCTATCCGAGATCGACTGACATTTCGT
ATATTTTTTCAATGCACCTGGAGCCGTGTCGATTTAGAGACATTGATTACGCTGTGATAG
ACCTATGTTCTTCGTTTACCAATGTGCGCTCTGCAGTGTGGTATCTAATTCGTTTCGTAC
ACTGCAGATACCTACAAATTAACCTTGCTTATGTAAATACTTTCTTTGCACTTTTCACTT
CTTCTTGTTTCTTCAATTTCGGTGCGAGGTCGACTTCAAGTTTCTATTCAGTTCCTCGAT
GCAATAAAATATTTTGTCAAT
| ProSiteProfiles |
POU_dom (IPR000327) - T[229-306] 46.301 |
| SMART |
POU_dom (IPR000327) - T[229-306] 1.1E-48 |
| SUPERFAMILY |
Lambda_DNA-bd_dom_sf (IPR010982) - T[230-306] 7.5E-21 |
| Pfam |
POU_dom (IPR000327) - T[234-306] 9.5E-29 |
| CDD |
Cro/C1-type_HTH (IPR001387) - T[241-283] 0.00723342 |
| ProSitePatterns |
POU_dom (IPR000327) - T[247-259] . - T[274-287] . |
| PRINTS |
POU (IPR013847) - T[248-265] 2.9E-34 - T[274-287] 2.9E-34 - T[290-305] 2.9E-34 - T[320-340] 2.9E-34 - T[355-370] 2.9E-34 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[318-379] 1.28E-15 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[319-379] 16.86 |
| SMART |
Homeobox_dom (IPR001356) - T[321-383] 1.4E-17 |
| CDD |
Homeobox_dom (IPR001356) - T[322-380] 4.05819E-16 |
| Pfam |
Homeobox_dom (IPR001356) - T[322-378] 7.6E-17 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[354-377] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PO4F2_HUMAN | 83.648 % | 278 | 1.01E-90 |
| PO4F3_HUMAN | 50.416 % | 286 | 1.32E-94 |
| PO4F1_HUMAN | 86.076 % | 277 | 3.82E-90 |