- Region 'REG00001574' >
- Transcript 'KH2012:KH.C2.42.v2.A...'
Transcript Model
Transcript Id
KH2012:KH.C2.42.v2.A.SL1-1
Possible name(s)
POU4F1; POU4F2; POU4F3
Gene model
Location
KhC2 [2,301,663 / 2,304,442]
Amino acid sequence
Length: 414
>KH.C2.42.v2.A.SL1-1
YDMFTNMLAPHHHHRPPSPPTTMTPLNTSYGEQKYAPLHNAADAVRRHCMASPVAYSGNL
FAGFDESFLARQAEALAAVEYPGKSQFKPEPTNHSYYPPAPHYVTQQHTTSAVPPPVYSS
MHPPPAFHHSAALQTSLDSSDVIDQLGSSHCGLPTYQPPTFNSSVMMTSDVTSQPHYITH
PAPTYNPPNHFHPTSSAMHSTVSVTPISAPIITQAGKYGSGCTTPRDQWDDDVTNVFVTG
SPPPSVPSFTSNEYDADPRELEAFAERFKQRRIKLGVTQNDVGQALANLKLPGVGSLSQS
TICRFESLTLSHNNMVALKPILITWLEKAEEEHRRKMENAAMGEKKRKRTSIAAPEKRSL
EAYFAVQPRPSSEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFSAFNGDVIM
Nucleotide sequence
Length: 1,653
>KH2012:KH.C2.42.v2.A.SL1-1
GCAAAAGCTGTATACAGACTTATTGTATATTTTTTGATACGATATGTTTACTAACATGCT
TGCTCCACACCATCACCACCGCCCTCCTTCACCACCTACTACAATGACACCACTCAATAC
AAGTTACGGTGAACAGAAATACGCCCCGCTTCATAACGCTGCAGATGCCGTCCGTCGACA
CTGCATGGCATCGCCAGTGGCATATTCCGGCAATCTGTTTGCTGGATTCGATGAGAGTTT
TCTTGCTCGCCAGGCCGAAGCGTTGGCCGCTGTAGAATATCCCGGAAAAAGTCAGTTTAA
ACCCGAACCGACCAACCACAGTTATTACCCCCCAGCCCCCCACTACGTTACGCAACAACA
CACAACATCAGCCGTACCACCACCAGTTTACAGTTCAATGCACCCTCCACCCGCTTTCCA
CCACTCAGCGGCGCTGCAAACAAGTCTTGACAGCAGTGACGTCATCGACCAACTTGGGTC
TTCTCACTGTGGCCTTCCAACTTATCAACCGCCAACATTTAACTCGTCGGTGATGATGAC
GTCAGACGTGACGTCACAGCCCCATTACATCACCCACCCCGCCCCAACCTACAACCCCCC
GAATCATTTCCATCCTACGTCATCAGCAATGCACTCGACTGTATCAGTCACGCCCATCTC
TGCACCAATCATCACCCAAGCCGGTAAATATGGGTCTGGCTGCACTACACCACGTGATCA
ATGGGATGATGACGTAACAAATGTCTTTGTGACAGGCTCCCCTCCGCCAAGCGTGCCAAG
TTTTACCTCCAACGAGTACGACGCCGATCCCCGTGAACTAGAAGCCTTCGCAGAAAGATT
CAAGCAGCGACGCATTAAACTTGGAGTGACGCAGAATGATGTTGGGCAAGCTCTTGCCAA
CCTCAAGCTACCGGGTGTTGGATCGCTGAGCCAAAGCACAATTTGCAGGTTTGAGTCCTT
GACACTCAGTCACAACAACATGGTCGCCTTGAAACCAATCTTGATCACGTGGTTAGAAAA
AGCGGAGGAAGAGCACAGGAGGAAGATGGAGAATGCTGCTATGGGAGAAAAGAAGAGAAA
AAGAACTTCCATCGCTGCTCCGGAGAAACGTTCGTTGGAGGCTTACTTCGCCGTGCAGCC
CCGACCTTCGTCTGAGAAAATCGCTGCAATCGCGGAAAAGCTCGACTTAAAGAAAAACGT
CGTGCGTGTGTGGTTTTGCAATCAAAGGCAGAAACAAAAGAGAATGAAATTTTCAGCATT
TAATGGGGACGTGATTATGTAGAATATGCTGTGACCTCTTCAATGCATTCGACAGCACAA
TTGCTTTGCACCATCCCATAAAACGTACTGCACCTTCAACACTGCCCTATCCGAGATCGA
CTGACATTTCGTATATTTTTTCAATGCACCTGGAGCCGTGTCGATTTAGAGACATTGATT
ACGCTGTGATAGACCTATGTTCTTCGTTTACCAATGTGCGCTCTGCAGTGTGGTATCTAA
TTCGTTTCGTACACTGCAGATACCTACAAATTAACCTTGCTTATGTAAATACTTTCTTTG
CACTTTTCACTTCTTCTTGTTTCTTCAATTTCGGTGCGAGGTCGACTTCAAGTTTCTATT
CAGTTCCTCGATGCAATAAAATATTTTGTCAAT
| ProSiteProfiles |
POU_dom (IPR000327) - T[253-330] 46.301 |
| SMART |
POU_dom (IPR000327) - T[253-330] 1.1E-48 |
| SUPERFAMILY |
Lambda_DNA-bd_dom_sf (IPR010982) - T[254-330] 8.75E-21 |
| Pfam |
POU_dom (IPR000327) - T[258-330] 1.0E-28 |
| CDD |
Cro/C1-type_HTH (IPR001387) - T[265-307] 0.00769651 |
| ProSitePatterns |
POU_dom (IPR000327) - T[271-283] . - T[298-311] . |
| PRINTS |
POU (IPR013847) - T[272-289] 3.8E-34 - T[298-311] 3.8E-34 - T[314-329] 3.8E-34 - T[344-364] 3.8E-34 - T[379-394] 3.8E-34 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[342-403] 1.41E-15 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[343-403] 16.86 |
| SMART |
Homeobox_dom (IPR001356) - T[345-407] 1.4E-17 |
| CDD |
Homeobox_dom (IPR001356) - T[346-404] 3.30786E-16 |
| Pfam |
Homeobox_dom (IPR001356) - T[346-402] 8.2E-17 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[378-401] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PO4F2_HUMAN | 83.648 % | 278 | 4.43E-90 |
| PO4F3_HUMAN | 47.222 % | 280 | 9.8E-92 |
| PO4F1_HUMAN | 86.076 % | 276 | 1.52E-89 |