- Transcript 'KH2012:KH.C11.339.v1...' >
- Transcript 'KH2012:KH.C2.471.v1....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v1.A.ND2-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 83,358]
Amino acid sequence
Length: 612
>KH.C2.471.v1.A.ND2-1
SITTLEDLHGFESKLYFSIYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDR
WGGRGGGGGGRGRSDRGGKYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHV
QEYYQKHEVTVTGSNLKKPVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQD
LVGIAQTGSGKTLSFILPAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQL
CHIRNTCVYGGASKAPQIRDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRM
LDMGFEPQIRKIIDQIRPDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNI
LQIVDVCTEDEKSEKLMRLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHG
DKSQPERDWVLNEFRTGKSPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTA
RANQTGTAYTFFTQANAKQCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSR
GGYGYGGGRSNGFGGAGGQRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGT
QFMMMPGGPVPM
Nucleotide sequence
Length: 2,539
>KH2012:KH.C2.471.v1.A.ND2-1
CGTAATGCCTTTAGCGAGAGTAGTTGGTTTATATTCCAGTACTATGTTGTCGTTAGCATG
TAAGACAAGCCTAGGCTATAATAATCCCGGAGATCCAATATTTGAACCTGAACCTGGAAC
CCAGTAAATTGATTCTCGCAATTGTTAGCGAGGAACTCTTATCGTCGTTCACAGATCCTG
TCTCTTCCACGATGGATCTGTGCTGGTGCGACGTTCCAGGTTTAAGAGTTTATGGCCAAC
TACGGAGTGGTTGGTGCTGAGATCTGGATTTCCGGTTAAGTTAAAATCTTTCATCTGATG
GACCTGGGCGTGGAAACCGGGTCAACAGATGAAGGAATAATCCATTACAACCCTGGAAGA
TTTGCACGGTTTCGAATCCAAATTATATTTTTCAATTTACATTATACTTACTGTAACAAG
AATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTACGGCAGCTATGGAGG
GGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGAGGAAGGGGAGGTGG
GGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAACTCTGCTGGAAGCGG
TCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAAAAAGAATTTTATCA
AGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAATATTATCAGAAGCA
TGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTCTTTCATGAGGCAAG
TTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAGGCACCAACTCCTAT
ACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTTGGGATTGCTCAAAC
TGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCACATTAATGCTCAGCC
ATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCTACAAGGGAGTTGGC
ACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCACATTAGGAATACCTG
TGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAGAGAGGTTGTGAAAT
CGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGCAAGACAAACCTTCG
CAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGACATGGGTTTTGAACC
ACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACACTGATGTGGAGTGC
AACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGAGATAATGTTCATAT
CCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAAATCGTTGATGTTTG
TACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAAATAATGGGAGAGGC
AGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGATATTCTCACTCGCAA
CATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAATCCCAACCAGAGAG
AGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTGGTTGCAACAGACGT
GGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAATTTTGATTTTCCAAA
TCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCGAATCAAACTGGAAC
TGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGATTTAATTGAAATCCT
TAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCTCAATCATCATGGGG
AAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGTTATGGTTACGGAGG
AGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGTGGTGGCTACAACAA
CAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAGCAAACAAATGGTTA
CGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTTATGATGATGCCAGG
AGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTAATCCACTAGTTTGT
AATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTATTCTCTTCGTTTGC
GCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTTTAACCGAAACCAAG
CTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTAGACCACTTTTGTTC
TTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCTTTATTACTAAGTTA
TCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTAGCGTACCATGTAAA
ATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[141-169] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[160-363] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[165-336] 6.7E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[172-347] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[213-501] 6.32E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[293-301] . |
| CDD |
Helicase_C (IPR001650) - T[359-491] 4.43949E-42 |
| Pfam |
Helicase_C (IPR001650) - T[375-483] 1.2E-29 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[375-522] 25.029 |
| SMART |
Helicase_C (IPR001650) - T[402-483] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 57.869 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 357 | 2.4E-112 |