- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL10-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,620]
Amino acid sequence
Length: 593
>KH.C2.471.v2.A.nonSL10-1
YIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGK
YDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKP
VLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPA
MIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIR
DLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPD
RQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRL
MEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKS
PILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQ
CKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQ
RSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,143
>KH2012:KH.C2.471.v2.A.nonSL10-1
TTACATTATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGA
CCGTGGTTACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGA
TCGCTGGGGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAA
ATATGACAACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAAC
TCCGTTTCAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCA
TGTTCAAGAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACC
TGTGCTTTTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAA
TGGATTTAAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCA
AGATCTTGTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGC
TATGATTCACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGT
ACTTTGCCCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCA
GCTTTGCCACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAG
AGATTTGGAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCT
AGAAGCCCGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAG
AATGTTGGACATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGA
CAGACAAACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGA
TTTTCTCAGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAA
TATTCTACAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATT
GATGGAAGAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAG
AAAATGTGATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCA
TGGTGACAAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTC
TCCAATTCTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATT
TGTCATAAATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAAC
AGCAAGAGCGAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCA
GTGCAAAGATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGAT
GGAGTTGGCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAG
TCGTGGAGGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACA
ACGTAGTAGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATA
TGGGGGACAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGG
TACACAGTTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACA
ATGTATTTTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGA
AGAAAGGCTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAG
TCTGCTGCTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATAC
CATGTTATTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGG
CCAATTTTCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAG
TGAGCTCGTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[122-150] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[141-344] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[146-317] 6.3E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[153-328] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[194-482] 5.86E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[274-282] . |
| CDD |
Helicase_C (IPR001650) - T[340-472] 3.00561E-42 |
| Pfam |
Helicase_C (IPR001650) - T[356-464] 1.1E-29 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[356-503] 25.029 |
| SMART |
Helicase_C (IPR001650) - T[383-464] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 668 | 0 |
| DDX42_HUMAN | 40.358 % | 358 | 7.0E-113 |