- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Clone 'cien116694' >
- Transcript 'KH2012:KH.L98.1.v2.A...' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL11-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,604]
Amino acid sequence
Length: 588
>KH.C2.471.v2.A.nonSL11-1
VTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYDNSA
GSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVLFFH
EASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMIHIN
AQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDLERG
CEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQTLM
WSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLMEEIM
GEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPILVA
TDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCKDLI
EILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRSSGG
YNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,127
>KH2012:KH.C2.471.v2.A.nonSL11-1
GTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGTTACGGCAGC
TATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGGGGAGGAAGG
GGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGACAACTCTGCT
GGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTTCAAAAAGAA
TTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAAGAATATTAT
CAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTTTTCTTTCAT
GAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTTAAGGCACCA
ACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTTGTTGGGATT
GCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATTCACATTAAT
GCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGCCCTACAAGG
GAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGCCACATTAGG
AATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTGGAGAGAGGT
TGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCCCGCAAGACA
AACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTGGACATGGGT
TTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAAACACTGATG
TGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTCAGAGATAAT
GTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTACAAATCGTT
GATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAAGAAATAATG
GGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGTGATATTCTC
ACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGACAAATCCCAA
CCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATTCTGGTTGCA
ACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATAAATTTTGAT
TTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGAGCGAATCAA
ACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAAGATTTAATT
GAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTGGCTCAATCA
TCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGAGGTTATGGT
TACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGTAGTGGTGGC
TACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGACAGCAAACA
AATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAGTTTATGATG
ATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATTTTAATCCAC
TAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGGCTATTCTCT
TCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTGCTTTAACCG
AAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTATTAGACCAC
TTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTTTCTTTATTA
CTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTCGTAGCGTAC
CATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[117-145] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[136-339] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[141-312] 6.2E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[148-323] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[189-477] 5.77E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[269-277] . |
| CDD |
Helicase_C (IPR001650) - T[335-467] 1.94964E-42 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[351-498] 25.029 |
| Pfam |
Helicase_C (IPR001650) - T[351-459] 1.1E-29 |
| SMART |
Helicase_C (IPR001650) - T[378-459] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 669 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 5.3E-113 |