- Transcript 'Moocul.CG.ELv1_2.S73...' >
- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL12-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,613]
Amino acid sequence
Length: 591
>KH.C2.471.v2.A.nonSL12-1
ILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGGKYD
NSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKKPVL
FFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILPAMI
HINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQIRDL
ERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRPDRQ
TLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMRLME
EIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGKSPI
LVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAKQCK
DLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGGQRS
SGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,136
>KH2012:KH.C2.471.v2.A.nonSL12-1
ATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGGTGACCGTGGT
TACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAACGATCGCTGG
GGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGGGAAATATGAC
AACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTTAACTCCGTTT
CAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCATCATGTTCAA
GAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAAACCTGTGCTT
TTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTCCAATGGATTT
AAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGGTCAAGATCTT
GTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCCAGCTATGATT
CACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCTTGTACTTTGC
CCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGGGCAGCTTTGC
CACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAATTAGAGATTTG
GAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTTTCTAGAAGCC
CGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGACAGAATGTTG
GACATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCCAGACAGACAA
ACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAATGATTTTCTC
AGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCACAATATTCTA
CAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAGATTGATGGAA
GAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAAGAGAAAATGT
GATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTATTCATGGTGAC
AAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAAGTCTCCAATT
CTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAAATTTGTCATA
AATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCGAACAGCAAGA
GCGAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAAGCAGTGCAAA
GATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTTGATGGAGTTG
GCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAGTAGTCGTGGA
GGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGGACAACGTAGT
AGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGCATATGGGGGA
CAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGCAGGTACACAG
TTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTAACAATGTATT
TTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTTGGAAGAAAGG
CTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATACAGTCTGCTG
CTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATATACCATGTTA
TTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTTAGGCCAATTT
TCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGCCAGTGAGCTC
GTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[120-148] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[139-342] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[144-315] 6.3E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[151-326] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[192-480] 5.81E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[272-280] . |
| CDD |
Helicase_C (IPR001650) - T[338-470] 2.27838E-42 |
| Pfam |
Helicase_C (IPR001650) - T[354-462] 1.1E-29 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[354-501] 25.029 |
| SMART |
Helicase_C (IPR001650) - T[381-462] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 668 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 7.24E-113 |