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  1. Transcript 'NCBI:KH.XM_018811846...'
  2. Transcript 'KH2012:KH.L18.39.v2....'
  3. Transcript 'KH2012:KH.C8.551.v2....'
  4. Region 'REG00000340'
  5. Transcript 'KH2012:KH.C2.471.v2....'

Transcript Model

Transcript Id

KH2012:KH.C2.471.v2.A.nonSL13-1

Possible name(s)

DDX17; DDX42; DDX5

Location

KhC2 [80,477 / 82,633]

Sequences

Amino acid sequence

Length: 597

>KH.C2.471.v2.A.nonSL13-1
YFSIYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSD
RGGKYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSN
LKKPVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSF
ILPAMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKA
PQIRDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQ
IRPDRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEK
LMRLMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFR
TGKSPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQA
NAKQCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGG
AGGQRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM

Nucleotide sequence

Length: 2,156

>KH2012:KH.C2.471.v2.A.nonSL13-1
TATATTTTTCAATTTACATTATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAG
ATCGTGGAGGTGACCGTGGTTACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATG
GAGGAGGAAACGATCGCTGGGGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGG
ATCGAGGTGGGAAATATGACAACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATT
GTGAAAAGTTAACTCCGTTTCAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAA
GACCAGTCCATCATGTTCAAGAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAA
ACTTAAAGAAACCTGTGCTTTTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATC
AGTTGCTGTCCAATGGATTTAAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATG
CACTTGGCGGTCAAGATCTTGTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCAT
TTATTTTGCCAGCTATGATTCACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTC
CAATTGCTCTTGTACTTTGCCCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAA
ATGATTATGGGCAGCTTTGCCACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAG
CCCCTCAAATTAGAGATTTGGAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCC
TTATTGATTTTCTAGAAGCCCGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTG
ATGAAGCTGACAGAATGTTGGACATGGGTTTTGAACCACAAATACGAAAAATTATTGATC
AGATTCGTCCAGACAGACAAACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAA
AGCTCGCAAATGATTTTCTCAGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTT
CTGCGAATCACAATATTCTACAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAA
AGCTAATGAGATTGATGGAAGAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCA
CAGAAACTAAGAGAAAATGTGATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTG
CCATGTGTATTCATGGTGACAAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTC
GAACAGGAAAGTCTCCAATTCTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTT
CAGATATCAAATTTGTCATAAATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATC
GAATTGGGCGAACAGCAAGAGCGAATCAAACTGGAACTGCATACACATTTTTCACACAAG
CCAATGCTAAGCAGTGCAAAGATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTA
ACCCAAGGTTGATGGAGTTGGCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAG
GTGGTGGCAGTAGTCGTGGAGGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTG
GAGCTGGTGGACAACGTAGTAGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAAC
CAGCTGGTGCATATGGGGGACAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTG
GTAACATGGCAGGTACACAGTTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGA
AACATTCCTAACAATGTATTTTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCAC
AATCATACTTGGAAGAAAGGCTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTA
CTACATAATACAGTCTGCTGCTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTC
AGCTTGTATATACCATGTTATTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAA
CCACGAATTTAGGCCAATTTTCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTA
GGCGTTATGCCAGTGAGCTCGTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA

InterProScan

ProSiteProfiles
RNA_helicase_DEAD_Q_motif (IPR014014) - T[126-154] 9.737
SMART
Helicase_ATP-bd (IPR014001) - T[145-348] 1.5E-64
Pfam
DEAD/DEAH_box_helicase_dom (IPR011545) - T[150-321] 6.4E-48
ProSiteProfiles
Helicase_ATP-bd (IPR014001) - T[157-332] 32.031
SUPERFAMILY
P-loop_NTPase (IPR027417) - T[198-486] 5.86E-76
ProSitePatterns
RNA-helicase_DEAD-box_CS (IPR000629) - T[278-286] .
CDD
Helicase_C (IPR001650) - T[344-476] 3.69334E-42
Pfam
Helicase_C (IPR001650) - T[360-468] 1.1E-29
ProSiteProfiles
Helicase_C (IPR001650) - T[360-507] 25.029
SMART
Helicase_C (IPR001650) - T[387-468] 1.9E-32

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DDX17_HUMAN 62.715 % 667 0
DDX5_HUMAN 57.869 % 669 0
DDX42_HUMAN 41.63 % 358 8.33E-113





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