- Transcript 'KH2012:KH.C2.471.v2....'
Transcript Model
Transcript Id
KH2012:KH.C2.471.v2.A.nonSL14-1
Possible name(s)
DDX17; DDX42; DDX5
Gene model
Location
KhC2 [80,477 / 82,623]
Amino acid sequence
Length: 594
>KH.C2.471.v2.A.nonSL14-1
IYIILTVTRMPGYGSRDRGGDRGYGSYGGGRSNGSYGGGNDRWGGRGGGGGGRGRSDRGG
KYDNSAGSGLRKPKWDCEKLTPFQKEFYQEHPSTAGRPVHHVQEYYQKHEVTVTGSNLKK
PVLFFHEASFPDYINNQLLSNGFKAPTPIQAIGWPHALGGQDLVGIAQTGSGKTLSFILP
AMIHINAQPYLERGDGPIALVLCPTRELAQQVQAVANDYGQLCHIRNTCVYGGASKAPQI
RDLERGCEIVIATPGRLIDFLEARKTNLRRCTYLVLDEADRMLDMGFEPQIRKIIDQIRP
DRQTLMWSATWPKEVQKLANDFLRDNVHIQIGSVNISANHNILQIVDVCTEDEKSEKLMR
LMEEIMGEAENKTIIFTETKRKCDILTRNMRRDGWPAMCIHGDKSQPERDWVLNEFRTGK
SPILVATDVASRGLDVSDIKFVINFDFPNQCEDYIHRIGRTARANQTGTAYTFFTQANAK
QCKDLIEILKEAKQQINPRLMELAQSSWGNFGKNRRGGGSSRGGYGYGGGRSNGFGGAGG
QRSSGGYNNSGAYGGKPAGAYGGQQTNGYAKPQQNFGNMAGTQFMMMPGGPVPM
Nucleotide sequence
Length: 2,146
>KH2012:KH.C2.471.v2.A.nonSL14-1
AATTTACATTATACTTACTGTAACAAGAATGCCCGGTTATGGTTCAAGAGATCGTGGAGG
TGACCGTGGTTACGGCAGCTATGGAGGGGGACGTAGTAATGGCTCTTATGGAGGAGGAAA
CGATCGCTGGGGAGGAAGGGGAGGTGGGGGAGGCGGAAGAGGAAGATCGGATCGAGGTGG
GAAATATGACAACTCTGCTGGAAGCGGTCTCCGCAAGCCAAAGTGGGATTGTGAAAAGTT
AACTCCGTTTCAAAAAGAATTTTATCAAGAACATCCAAGTACTGCAGGAAGACCAGTCCA
TCATGTTCAAGAATATTATCAGAAGCATGAGGTTACAGTTACTGGGTCAAACTTAAAGAA
ACCTGTGCTTTTCTTTCATGAGGCAAGTTTTCCAGATTACATTAATAATCAGTTGCTGTC
CAATGGATTTAAGGCACCAACTCCTATACAAGCAATTGGTTGGCCACATGCACTTGGCGG
TCAAGATCTTGTTGGGATTGCTCAAACTGGATCTGGTAAAACACTCTCATTTATTTTGCC
AGCTATGATTCACATTAATGCTCAGCCATATCTTGAAAGAGGAGATGGTCCAATTGCTCT
TGTACTTTGCCCTACAAGGGAGTTGGCACAACAAGTTCAAGCAGTTGCAAATGATTATGG
GCAGCTTTGCCACATTAGGAATACCTGTGTATATGGTGGGGCATCAAAAGCCCCTCAAAT
TAGAGATTTGGAGAGAGGTTGTGAAATCGTGATCGCTACACCAGGTCGCCTTATTGATTT
TCTAGAAGCCCGCAAGACAAACCTTCGCAGATGTACTTACTTGGTTCTTGATGAAGCTGA
CAGAATGTTGGACATGGGTTTTGAACCACAAATACGAAAAATTATTGATCAGATTCGTCC
AGACAGACAAACACTGATGTGGAGTGCAACATGGCCAAAGGAAGTTCAAAAGCTCGCAAA
TGATTTTCTCAGAGATAATGTTCATATCCAAATTGGATCTGTGAATATTTCTGCGAATCA
CAATATTCTACAAATCGTTGATGTTTGTACAGAAGATGAAAAATCCGAAAAGCTAATGAG
ATTGATGGAAGAAATAATGGGAGAGGCAGAGAATAAGACAATCATATTCACAGAAACTAA
GAGAAAATGTGATATTCTCACTCGCAACATGAGGCGTGATGGTTGGCCTGCCATGTGTAT
TCATGGTGACAAATCCCAACCAGAGAGAGATTGGGTTTTAAATGAGTTTCGAACAGGAAA
GTCTCCAATTCTGGTTGCAACAGACGTGGCATCACGTGGTCTTGATGTTTCAGATATCAA
ATTTGTCATAAATTTTGATTTTCCAAATCAATGTGAAGATTACATTCATCGAATTGGGCG
AACAGCAAGAGCGAATCAAACTGGAACTGCATACACATTTTTCACACAAGCCAATGCTAA
GCAGTGCAAAGATTTAATTGAAATCCTTAAGGAGGCAAAGCAGCAAATTAACCCAAGGTT
GATGGAGTTGGCTCAATCATCATGGGGAAATTTCGGTAAGAATCGCAGAGGTGGTGGCAG
TAGTCGTGGAGGTTATGGTTACGGAGGAGGCAGAAGCAATGGTTTTGGTGGAGCTGGTGG
ACAACGTAGTAGTGGTGGCTACAACAACAGTGGTGCCTATGGTGGAAAACCAGCTGGTGC
ATATGGGGGACAGCAAACAAATGGTTACGCAAAACCACAACAAAATTTTGGTAACATGGC
AGGTACACAGTTTATGATGATGCCAGGAGGTCCAGTCCCAATGTAAAAGAAACATTCCTA
ACAATGTATTTTAATCCACTAGTTTGTAATGCTTGTGTAAAGTTGAGCACAATCATACTT
GGAAGAAAGGCTATTCTCTTCGTTTGCGCTGTAATATTTTCCAGTTACTACTACATAATA
CAGTCTGCTGCTTTAACCGAAACCAAGCTTGGTTGTTGGTATGTAGCTTCAGCTTGTATA
TACCATGTTATTAGACCACTTTTGTTCTTGATTTTAGCATTATTTATCAACCACGAATTT
AGGCCAATTTTCTTTATTACTAAGTTATCTAACCGAACTTGCTGATTTTAGGCGTTATGC
CAGTGAGCTCGTAGCGTACCATGTAAAATAAATTCTTTCAAAACAA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[123-151] 9.737 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[142-345] 1.5E-64 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[147-318] 6.3E-48 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[154-329] 32.031 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[195-483] 5.86E-76 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[275-283] . |
| CDD |
Helicase_C (IPR001650) - T[341-473] 3.76409E-42 |
| Pfam |
Helicase_C (IPR001650) - T[357-465] 1.1E-29 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[357-504] 25.029 |
| SMART |
Helicase_C (IPR001650) - T[384-465] 1.9E-32 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX17_HUMAN | 62.715 % | 667 | 0 |
| DDX5_HUMAN | 58.033 % | 668 | 0 |
| DDX42_HUMAN | 41.63 % | 358 | 9.0E-113 |